Perognathus longimembris pacificus (Pacific pocket mouse): 125358276
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Entry
125358276 CDS
T08928
Symbol
Edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125358276 (Edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125358276 (Edc4)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125358276 (Edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
125358276 (Edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_HPS5
WDR55
DUF445
EIF3I
Motif
Other DBs
NCBI-GeneID:
125358276
NCBI-ProteinID:
XP_048211252
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All DBs
Position
10:complement(12623075..12635014)
Genome browser
AA seq
1402 aa
AA seq
DB search
MASCASIDIEDATQHLRDILKLDRPAGGTSAESQRPSSTYNGDLNGLLVPDPLNSGDTST
NKPGLRTMPPINLQEKQVICLSGDDSSTCIGILAKEVEVVASSDSSISSKARGSNKVKIQ
PVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVAD
LAFAHLNSPQLACLDEAGNLFVWRLALVNGKIQEEILVHIRQPEGTSLNQFRRIIWCPFI
PEESEDCCEESSPMVALLHEDRAEVWDLEMLRSNHSTWPVDVSQIKQGFIVVKGHSTCLS
EGALSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQD
PEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEYL
ILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPAE
EENDNLGAENSHGAGAVESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPTHTAH
EDFTFGESRPELSTEGLGSAAHGSQPDLRRIVELPAPADFLSLSSETKPKLMTPDAFMTP
TASLQQITASPGSSSSSSSSSSCLTAVSAVSSTSAVEPSLPSLPASRPPEELTLSPKLQL
DGSLTISSSSSLQTSPRSLLPGLLPGPAEKLTPKGPGQVQVSTAASALPMELQEVEPLGL
PQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSAAEGLEPDSMASAASALHLL
SPRPRAGPELGSQLGLEGVPGDGDRHSTPSLLEAALTQEAAAPDSQVWPTAPDITRETCS
TLAESPRNGLQEKHKSLAFHRLPYHLLQQHDSQDTSAEQSDHDDEVASLASASGGFGTKI
PTPRLPAKDWKTKGSPRSSPKLKRKSKKDDGDSTVGSRLTEHHVVEPPEDWPALIWQQQR
ELAELRHSQEELLQRLCAQLEGLQSTVTGHVERALETRHEQEQRRLEHALAEGQQRGGQL
QEQLTQQMSQALSSAVAGRLERSIRDEIKKTVPPSVSRSLEPVAGQLSNSVATKLTAVEG
SMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQIND
SFRLGTQEYLQQLENHTKSRKAREQEAREPVLAQLRGLVSTLQSATEQMVATVSSSVRAE
VQHQLHLAVGSLQESILAQVQRIVKGEVSVALKEQQATVTSSIMQAMRSAAGTPVPSAHL
DCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPPCPLSQPVLL
SLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPHN
SLGKAARRLSLMLHGLVTPTLP
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgcgcgagcatcgacatcgaggacgccacgcagcatctgcgggacatcctc
aagctggaccggccggcagggggcaccagtgcagaaagccagaggccatctagtacctac
aatggggacctcaatgggctcctggttccagaccctctcaactcaggtgatacatcaaca
aacaagcctggtttgcggaccatgccacccattaacctgcaggagaagcaggtcatctgc
ctctctggagatgacagctccacctgcattgggattttggccaaggaggtggaggttgtg
gccagcagtgactctagcatttcaagcaaggctcgggggagcaacaaggtgaaaattcag
cctgtagctaaatatgactgggaacagaagtactactacggaaacctgattgctgtatct
aactccttcttggcatatgctattcgggctgccaacaacggttcagcaatggtgcgagtg
atcagtgtcagcacttcggaacggaccctgctcaagggcttcacaggcagtgtggctgat
ctggcctttgcacatctcaactctcctcagctagcctgcctagatgaggcaggcaacctg
tttgtgtggcgcttagctctagttaatggcaaaattcaagaagagatcttagtccatatc
cggcagccagagggcacgtcactaaaccagttccgtaggatcatctggtgtcctttcatc
cctgaggagagtgaggactgttgtgaggagagcagcccaatggtggccctactgcatgaa
gaccgggctgaggtgtgggacctggaaatgctccgctccaaccatagcacctggcctgtg
gatgtcagccaaatcaagcagggcttcattgtggtaaaaggccacagcacgtgcctaagt
gaaggagccctctcccctgatgggaccgtcctggctactgcaagccatgatgggtacgtc
aagttctggcagatttacattgaagggcaagatgagccaaggtgtcttcacgagtggaag
cctcatgatggacggcccctctcctgtctcctgttctgtgataaccataagaaacaggac
cctgaagtcccattctggaggttcctcattactggtgctgatcagaatcgggagctgaag
atgtggtgcacagtgtcctggacctgcctgcagaccattcgtttctctccagatatcttc
agctcagtgagtgtgccccccagtcttaaggtttgcttggatctctcagcagaatacctt
attctcagtgatgtacaacggaaggttctctatgtgatggagctgctacagaaccaggag
gaaggccgggcttgcttcagctccatctcggagttcctactcacccaccctgtgctgagc
ttcggcatccaggttgtgagtcgctgcaggctacggcacactgaggtgctgcctgctgag
gaagaaaatgacaacctgggagctgagaattcccatggagctggtgctgtggagtctgca
gctggtgtgctcatcaagcttttttgtgtacatactaaggcattgcaggatgtgcagatc
cgcttccagccgcagctaaaccctgatgtggtggccccactccccacccacactgcccat
gaagacttcacttttggagaatctcgacctgaactgagcactgagggcctgggatcagct
gctcatggatcccagcctgaccttcgacgcatagtggagctgcctgcacctgctgacttc
ctcagcctgagcagtgagactaagcctaagctgatgacacctgatgccttcatgacacct
accgcctccctgcagcagatcactgcatctcctggcagcagtagcagcagcagtagcagc
agcagctgtctaacagctgtgtctgccgtgagcagcacctcagctgtggaaccctcactg
cccagtcttcctgccagcaggccacctgaggagctgaccttgagccccaagttgcagctg
gatggcagtttgacaataagcagcagcagcagcctgcagacaagccctcggagcctcctg
cctggccttctcccaggcccagctgaaaaactgactcccaaggggcctgggcaggtacag
gtatctactgctgcctctgcactgcccatggagctgcaggaagtagagcccctggggcta
ccccaggcctcccccagtcgcactcgttcccctgatgttatctcctcggcttctactgcc
ctgtctcaggacattcctgagattgcatcagaggccctgtcccgtggctttggctcctct
gctgccgagggccttgagccagacagtatggcctcagctgcctcagcactgcacctgctg
tcaccacggccccgggcagggcccgagcttggttcccagcttggcttagaaggagtccct
ggggacggggatcgacatagtaccccttcattactggaggcagccttgacccaggaagct
gcggccccagatagtcaggtctggcccacagcacctgacatcactcgtgagacctgtagc
acactggcagagagccctaggaatggcctccaggaaaagcacaaaagcttagctttccac
cgactaccttatcacctgctgcagcagcatgacagccaagacaccagtgctgaacaaagt
gaccatgatgatgaggtagccagtcttgcctctgcctcaggaggctttggcaccaaaatt
cctactccacggctgcctgctaaggactggaaaaccaaaggatcccctcggagctcaccc
aagctcaagaggaaaagcaagaaggatgacggggattcaactgtgggatcccggctcacg
gaacaccatgtggtagagccccctgaggactggccagcactaatttggcagcagcagaga
gagctggcagagctgcgacacagccaagaagagctgctacagcgtctttgtgcccagctt
gaaggtctgcagagcactgtcacaggccatgtagaacgtgcccttgagacccggcacgag
caggaacagcggcgactggagcacgcactggctgagggtcagcagcgaggtgggcagctt
caggagcagctgacgcagcagatgtctcaggcactgtcctccgctgtggctgggcggctg
gagcgcagtatacgggatgagatcaagaagacagttcctccctctgtttccaggagtctg
gagcctgtggcaggacaactgagcaactcagtggctactaagctcacagctgtggagggc
agcatgaaagagaatatctccaagttactcaagtccaagaacttgacagatgccattgcc
cgagcagctgccgatacattacaggggccaatgcaagctgcctaccgtgaagccttccag
agtgtggtactgcctgccttcgagaagagctgccaggccatgttccagcagatcaatgat
agttttcgcctgggcacacaagaatatctgcagcagctagaaaaccacacaaagagtcgg
aaggcacgggaacaggaggccagggagcctgtgctggcccaacttcggggcctggtcagt
acactgcagagcgccaccgagcagatggtagccaccgtgtccagcagtgttcgtgctgag
gtgcagcaccagctccatttggctgtgggcagtctacaggagtcaattttagcacaagta
caacgcattgtaaaaggtgaagtgagcgtggcactcaaagagcagcaggcaactgtcacc
tccagcatcatgcaggccatgcgctcagctgctggtacacctgtcccctctgcccacctg
gactgccaggctcagcaagcccatatcctgcagttactgcagcagggccatctcaatcag
gccttccagcaggcactaacagctgctgacctgaacctggtgctctatgtgtgtgaaact
gtggacccagcccaggtttttgggcaaccaccctgcccgctctcccagcctgttctcctt
tccctcatccagcagctggcatcagaccttggcactagaactgacctcaagctcagctac
ctggaagaggctgtgatgcacctggaccacagtgatcccatcactcgagatcatatgggc
tctgtcatggcgcaggtgcgccagaagctttttcaattcctacaggcagagcctcacaac
tcacttggcaaagcagcccggcgtctcagcctgatgcttcatggccttgtgacccccacc
ctcccttag
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integrated database retrieval system
