Perognathus longimembris pacificus (Pacific pocket mouse): 125358291
Help
Entry
125358291 CDS
T08928
Symbol
Ctcf
Name
(RefSeq) transcriptional repressor CTCF
KO
K23195
transcriptional repressor CTCF
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plop03000
]
125358291 (Ctcf)
03036 Chromosome and associated proteins [BR:
plop03036
]
125358291 (Ctcf)
Transcription factors [BR:
plop03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
125358291 (Ctcf)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
125358291 (Ctcf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
Zf-C2H2_ZNF451_C
zf-C2H2_ZN142
zf-C2H2_7th_ZNF462
zf-met
zf-C2HE
zf-C2H2_6
Zf-C2H2_ZNF451
zf-C2H2_15
zf-WIZ
Motif
Other DBs
NCBI-GeneID:
125358291
NCBI-ProteinID:
XP_048211283
LinkDB
All DBs
Position
10:complement(12796289..12843608)
Genome browser
AA seq
727 aa
AA seq
DB search
MEGEAVEAIVEESETFIKGKERKTYQRRREGGQEEDACHLPQNQTDGGEVVQDVNSSVQM
VMMEQLDPTLLQMKTEVMEGTVAPEAEAAVDDTQIITLQVVNMEEQPINIGELQLVQVPV
PVTVPVATTSVEELQGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQ
GELPPQEDPSWQKDPDYQPPAKKTKKTKKSKLRYTEEGKDVDVSVYDFEEEQQEGLLSEV
NAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCG
RAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYAS
VEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSG
TMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERY
ALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQLLDM
HFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENGGETKKSKRGRKR
KMRSKKEDSSDSENAEPDLDDNEDDEEPAVEIEPEPEPQPVTPAPPPAKKRRGRPPGRTN
QPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEPAEGEEEEAQPAATDAPNGDLTPEM
ILSMMDR
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtgaggcggtcgaagccattgtggaagagtctgaaactttcattaaaggaaag
gagagaaagacttaccagcgacgccgggaaggtggccaggaagaagatgcttgccacctg
ccccagaaccagacagatgggggtgaggtggtacaggatgtcaacagcagtgtacagatg
gtaatgatggaacagctggatcctacccttcttcaaatgaagactgaagtaatggagggt
acagtggctcccgaagcggaggctgcggtggatgatacacaaatcataaccttgcaagtt
gtaaatatggaggaacagcccattaatataggagagcttcagcttgttcaagtacctgtt
cctgtgactgtacctgttgctaccacttcagtagaagaacttcagggggcttatgaaaat
gaagtgtctaaagagggccttgcagaaagtgaacccatgatatgtcacacattacctttg
cctgaagggtttcaggtggtaaaagtgggggccaatggagaggtggagacactagagcaa
ggggaacttccacctcaggaagatccaagctggcaaaaagacccagattatcagccacca
gccaaaaaaacaaagaaaaccaaaaagagcaaactgcgttatacagaggagggcaaagat
gtggatgtgtctgtttatgattttgaagaagaacagcaggaaggcctgttgtcagaagtt
aatgcagagaaagtggttggtaatatgaagcctccaaagcccacaaaaattaaaaaaaaa
ggtgtaaagaagacattccagtgtgagctgtgcagttacacatgtccacggcgttcaaat
ttggatcgtcacatgaaaagccacactgatgagagaccacataaatgccatctctgtgga
agggcattcagaacagtcaccctcctgaggaatcaccttaatacacacacaggtactcgt
cctcacaagtgcccagactgcgacatggcctttgtgaccagtggagaattagtgcggcat
cgtcgttataagcatacccacgagaagccatttaaatgttccatgtgtgattatgccagt
gtagaagtcagcaaattaaaacgtcacattcgctctcatactggagagcgcccgttccag
tgcagtttgtgcagttatgccagcagggacacatacaagctgaaaagacatatgagaaca
cattcaggggaaaaaccttatgaatgttatatttgtcatgcacggtttacccaaagtggt
accatgaagatgcacattttacagaagcacacagaaaatgtggccaaatttcactgtccc
cactgtgacactgtcatagcccgaaaaagtgacttgggtgttcacttgcggaagcagcat
tcctacattgagcaaggcaagaaatgccgttactgcgatgctgtgtttcatgagcgctat
gctctcattcagcatcagaaatcacacaagaacgagaagcggtttaagtgtgaccagtgt
gattatgcatgtagacaggagaggcacatgatcatgcacaagcgcacccacactggggaa
aagccttacgcctgcagccactgcgacaagaccttccgccagaaacagctcctcgatatg
cattttaagcgctaccatgaccccaactttgtccctgcggcctttgtgtgttctaagtgt
gggaaaacatttactcgccggaataccatggcaagacatgctgataattgtgctggtcca
gatggtgtagaaggagaaaatggaggagaaacaaagaagagtaaacgtggaagaaaaaga
aagatgcgttctaaaaaagaagattcctctgatagtgaaaatgctgagccagatctggat
gataatgaggatgatgaggaacctgcagtagaaattgaaccagagccagagcctcaacct
gtgaccccagcccccccacctgccaagaagcggagaggaagacctcctggcagaaccaac
cagcccaaacagaatcagccaacagccatcattcaggttgaagaccagaatacaggtgca
attgagaacattatagttgaagtcaaaaaagagccagatgctgagcctgcagaaggggag
gaagaggaggcccagccagctgccacagatgcccccaatggagacctcacgcctgagatg
atcctcagcatgatggaccggtga
DBGET
integrated database retrieval system
