Perognathus longimembris pacificus (Pacific pocket mouse): 125358394
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Entry
125358394 CDS
T08928
Symbol
Katnb1
Name
(RefSeq) katanin p80 WD40 repeat-containing subunit B1 isoform X1
KO
K18643
katanin p80 WD40 repeat-containing subunit B1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
plop04812
]
125358394 (Katnb1)
Cytoskeleton proteins [BR:
plop04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
125358394 (Katnb1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Katanin_con80
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_RIG_1st
Beta-prop_WDR19_1st
RMC1_N
eIF2A
WDR54
Beta-prop_IP5PC_F
PROPPIN
Beta-prop_LRRK2
Beta-prop_NWD2_C
VPS8_N
Beta-prop_WDR35_TULP_N
Beta-prop_VPS8
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
125358394
NCBI-ProteinID:
XP_048211453
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Position
10:complement(20121952..20140006)
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AA seq
655 aa
AA seq
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MATPVVTKTAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLT
GHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFV
ASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGK
MMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFN
PDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWGKVADLAICNDQLIGVAFSQSNVSSYVV
DLTRVTRTGTVAQDPVQDSRNLTQQLPNPSIPLRRIYERPSTTCSKPQRVKHNSESERRS
PSSEDEREERESQAEIQNAEDYNEIFQPKNSISRTPPRRSEPFPAPPEDDTATAKEASKP
SLPMDVQVPVPNLEVPPRPPAITPTPAPKGEPAIIPATRNEPIGLKASDFLPAVKIPQQA
ELVDEDAMSQIRKGHDTMCVVLTSRHKNLDTVRAVWTTGDIKTSVDSAVAINDLSVVVDL
LNIVNQKASLWKLDLCTTVLPQIEKLLQSKYESYVQTGCTSLKLILQRFLPLITDILAAP
PSVGVDISREERLHKCRLCYKQLKSISSLVKTKSGLSGRHGSAFRELHLLMASLD
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggccacccctgtggtcaccaagacggcttggaagttgcaggagattgtcgcccatgcc
agcaatgtgtcctcgctggtgctgggaaaggcctctgggcgactgctggccacaggaggg
gatgactgccgtgtcaacctgtggtctatcaataaacccaactgcatcatgagcctaaca
ggccacacatctcccgtggagagtgtccgcctaaacacccccgaggagctcatcgtggct
ggctcccagtcaggctccattcgcgtctgggacctggaagctgccaaaattctgcgcaca
ctcatgggacacaaagccaacatctgcagcctggatttccacccttatggcgagtttgtg
gcctctggttcccaggacacaaatatcaagctctgggacatcaggagaaaaggctgtgtc
ttccggtaccggggacacagccaggctgtgcggtgtctgcggttcagtcctgatgggaag
tggttggcgtcagctgcagacgaccacactgtgaagctctgggacctgactgctggcaag
atgatgtccgagttccctggccacacagggcctgtcaacgtggtggagtttcaccccaat
gagtaccttctggcctctggcagctctgacaggacgatccgcttttgggacctggagaaa
ttccaggtagtgagctgcattgaaggggagcccgggcctgtcaggagtgtgctcttcaac
cccgacggctgctgcctgtacagtggctgccaggactcgctgcgggtgtatggctgggag
cccgagcgctgcttcgacgtggttcttgtcaactggggcaaggtggctgacctggccatc
tgcaatgaccagctgataggtgtggccttctcgcagagcaacgtctcctcttatgtggtg
gacctgacgcgtgttaccaggacaggcacagtggcccaggaccctgtgcaggacagccgg
aacctgacccagcagctgcccaaccctagtatccctctccgccgcatctacgagcggccc
agcacgacctgcagcaagcctcagagggtgaagcacaattcggagagtgagcgtcgcagc
cccagcagcgaggacgagcgggaggaacgggagtcccaggctgagatccagaatgccgaa
gactacaacgagatcttccagcccaagaacagcatcagccggacgccaccccggaggagc
gagcccttcccagcacccccggaggatgacacagctacagcaaaggaggcctcaaagccc
agcctacccatggatgtgcaggttccggtgccaaatctcgaggtcccgccacggcccccc
gccatcactcccacaccagcccccaaaggtgagcctgccatcatccctgccacacggaac
gagcccatcgggctgaaggcctcggacttcctgcctgctgtgaagatcccccagcaggcc
gagctggtggatgaggatgccatgtcccagattcgcaaaggccacgacaccatgtgtgtg
gtgctcaccagccgccacaagaacctggacacggtgcgggctgtgtggaccacaggggac
atcaagacgtcggtggactctgcagtagccatcaatgacctgtctgtggtcgtggacctc
ctgaacatcgtcaaccagaaggcctccctgtggaagctggacctgtgcactaccgtgctg
cctcagatcgagaagctcctacagagcaagtatgagagctacgtgcagacaggctgcacc
tccctgaagctgatcctgcagcggtttctgcccctcatcactgacatcctggcagccccg
ccctctgtgggggtggacatcagccgtgaggagaggctgcacaagtgccggctctgctac
aagcaactcaagagtatcagcagcctcgtcaagaccaagtcgggcctgagtggccgccac
ggcagtgccttccgcgagctgcacttgctcatggccagtttggactga
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