Perognathus longimembris pacificus (Pacific pocket mouse): 125358413
Help
Entry
125358413 CDS
T08928
Symbol
Nlrc5
Name
(RefSeq) protein NLRC5
KO
K22615
NLR family CARD domain containing 5
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
plop04054
]
125358413 (Nlrc5)
Pattern recognition receptors [BR:
plop04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
125358413 (Nlrc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
Atypical_Card
LRR_6
LRR_4
NLRC4_HD2
LRR_8
AAA_16
NPHP3_N
AAA
NOD2_WH
nSTAND3
AAA_22
NB-ARC
ABC_tran
AAA_25
AAA_33
RsgA_GTPase
TsaE
VapE-like_dom
Motif
Other DBs
NCBI-GeneID:
125358413
NCBI-ProteinID:
XP_048211491
LinkDB
All DBs
Position
10:complement(20609563..20672369)
Genome browser
AA seq
1846 aa
AA seq
DB search
MDPFSQQQDGGNLWSCLVSLLSRHPEWLSTKMRLFLPTVELSSSDDAPDVEQWVTQQLSK
LHAQGRDTWQSLVHCVCMELEVPLELEVLLLSTSGCDRDEFPGQLGADEERQPGAPLHHG
LKHPHQSCESLLSPKYYRKQQLAELARKYLELLRAFVHQHYDSKFSGPGQTLTTYQYYIP
SILQWSRATAPLNTPERPIARDINPEDGSDVDIQELFNFRAHKGPQVTVLLGKAGMGKTT
LARRLCRKWAAGQLDHFQALFLFEFCQLNLIKHSLTLPQLLFDLYLSPKSGSDAVFQYLE
ENADRVLLIFDGLDEALHSCSDKETLGPDGSASVFTLFSNLCRGTLLPGCWVIATSRPGK
LPTCLPKEAAVVHMWGFDGQRVQEYMSHFFSEQPSKEMVLEELHANGRLRGMCAVPALCR
VTCLCLHHLLPRTPVGQSAALLPTVTQLYLQMVLALCPCEDLPAASLLGLGEVALAGLDS
GKVVFCSEDIPPALVTFGATHSFLTSFYIRTSPRLQETGYAFAHLSLQEFFAALYLMASP
VVDRDTLTRHVTLRSYWVLRTKGKVGLSDQLPTFLAGLASHTCRPFLSHLAKRNEAWVGA
RQAAVVQVLRKLATHKLTGPKVVELCHCVAETQEAELASLMAQNLPDHLPFHNFPLSFTD
LAALMDILEHRADPLHLEFEGCLLEPHCPEALIGCGRVESLSFKSRKCGDAFAEALSRSL
PTMGSLQRLGLVGSKVTARGISHLVQALPLCRHLEEVSLQDNQLKDQEVLDIVTVLPCLP
RLCKLDLSRNSFSVSTLLQLVKVAVTCPNVTMLQARETELIFVLSPPMESDVELWRAPDL
QENVSPKRETLDRRLTLRLQKCQLRDCDVQVLIELLREGPHLEEVDLSENHLEDEGCQLL
AEAVPQLHITKKLDLSNNRLSTSGVASVLRAVDTCRSLAELHISLLHKAVVLMFAQEAGE
QEGSWESAALLHSRSPLGASELPSSSRDIRLTHCGFQAKHIQKLCKILGGYRRPHHPVQL
RHLDLSGNALGDNGVALLAQLLPGLGPLQSLNLSENGTSLATVLSLAQCMATLPWVFHVD
ISFENQHILLTGNKTGRGVLAAGPFPELRAGTQISGFGQRCITRSFCLKECPLNPPSLTR
LFHSLEACPGPLEIRLSCKALSDKSLETLLPCLSRMPQPSLLQLSQKQPSPRSPWLLAGI
LPLSPRLRKLEIRSLNQATLHFGCKEEPQGLDCGFPGCSLGPVHVEQLCHLLGRCKALSH
LDLDANLLGDQGLSALLELLRQTPLSGWLDLSHNGISQEGVLSLVENLPANPRVREALVN
LGPEQLFQLRFSRQEATCGVTLRLSHCHLRTEHIPRLAAGLSHTPQPTELTLTEDSLDLT
QLAVLLSRVKRPAGVLGLRLEEPWVGSASANVPDLLRVCAQASGHVTEMSTSETQLWLQL
EFPREEEDPQGALRLGPPIDPGTPHHHLTTQLMETCGRLRQLSLSQVNLCREDITSSGLL
LSLLPALSELQTFRLTSSCGSSEGLIHLVSGLSSCHHVEELDFSNCQFGEEGIWVLMAAL
EGKRRLKRLRLNENSIGDTGCCHLSQALRASGSLEELGLSHNQIGDIGAQHIAAALPELP
ELRKIDLSRNGISPVAGAQLAESLTLCQHLEALMLGYNALGDPTALQLAQGLPPHLRVLH
LPCSHLGPEGALSLGRALDGHPHVEEINLAENNLAKGTPLFYKGLPQLRRISLVSCKIHD
QTAKPLATSFMLCPALEEILLSWNLLGDAAAAELARVLPQMGQLKKVDLEKNQISARGAW
LLLQGLAWVAGEPVIRLWNNPIPADMAEHLQSQEPRLNFAFFDKQP
NT seq
5541 nt
NT seq
+upstream
nt +downstream
nt
atggatccttttagccaacagcaggacggcgggaacctgtggagctgtcttgtgagtctg
ctcagcaggcatccagaatggctgagcaccaagatgcggctcttcctccctaccgtggag
ctgagctccagtgatgatgccccagatgtggagcaatgggtcacccagcaactcagcaag
ctgcacgcccaagggcgggacacctggcaatcgctggtgcactgtgtgtgcatggagctg
gaggtgcctctggagctggaggtgcttctgctgagcacttcgggctgtgaccgagatgag
ttccccgggcagctgggagctgatgaggagaggcagcctggagctccactgcaccatggc
ctcaagcatcctcatcagagctgtgagtccttgctgagccccaagtactacaggaaacag
cagctagcagagttggccagaaaatacttggagctcctaagggcattcgtccaccagcac
tatgacagcaaattctcggggccagggcagacccttaccacctaccaatactacatcccc
tccatcctacaatggagccgggctacagcacccttgaacaccccagagaggcccatcgcc
agggacatcaacccagaagatggcagcgatgtagacatccaggaactcttcaacttcagg
gcccacaagggcccacaagtgacagtgctcttgggaaaggccggcatgggcaagaccaca
ctggcccggaggctctgccggaagtgggctgctggccagctagaccacttccaggccctg
ttcctttttgagttctgccagctcaacctgatcaaacactctttgacgctgccccagctc
ctttttgatctgtacctgagccccaaatcaggctctgacgctgtcttccagtacctagag
gagaatgctgatagagtcctgctgatttttgatgggctggatgaggccctgcactcctgt
tctgacaaggagaccctgggcccggacggctcagcttcagtcttcaccctcttctctaat
ctctgccgtggaaccctcctacctggctgctgggtgatcgctacctcccgtccagggaag
ctgcccacttgcctgcccaaagaggcagctgtggtccacatgtggggcttcgatgggcag
cgggtgcaggagtacatgagccacttcttcagtgagcagccttctaaagagatggtcctg
gaagagcttcatgcaaatgggcgtctccggggcatgtgcgcggtccctgccctgtgccga
gtcacctgcctctgcctccaccatctgctcccccgaacccccgtgggccagtcggcagcc
ctcctgcccacggtgactcagctctacctgcagatggtccttgccctctgcccctgtgag
gatcttcccgctgcgtccctgctgggcctgggggaggtggccctcgcaggcctggactcc
ggaaaggttgtcttctgttcggaggatattcctccagccttggtgacttttggagccacc
cacagctttctgacctccttctacatccgcacaagccccaggctccaggagacgggctat
gcatttgcccacctcagcctgcaggagttttttgctgccttgtacctgatggccagccct
gtggtggacagagacacactcactcgccatgtcacccttcgttcctactgggtgctgagg
accaaaggtaaagtgggcctctcagaccagctccccaccttcctggctggcctggcatct
cacacgtgccgtccattcctcagccacctggccaagaggaatgaagcctgggtgggcgcc
aggcaggctgctgttgtgcaggtgctgaggaaattggccacccataagctcaccgggccg
aaggtggtggagctgtgtcactgtgtagctgagacccaggaggctgaactggccagcctc
atggcccaaaacctccctgaccatctgcccttccacaatttcccactgagcttcacagac
ctggctgccctgatggacattctggagcacagagctgaccctctgcacctggagtttgaa
ggctgcctgctggagccccactgcccggaggctctgataggctgtgggcgggtagagtct
ctcagctttaagagcaggaagtgtggtgacgcatttgctgaagcattgtccaggagcttg
cctaccatggggagcctgcagaggctggggttagtgggaagcaaggtcacagcccgtggc
atcagccacttggtgcaggctttgcccctgtgtcgacatctggaggaggtcagtttacag
gataaccagctcaaagaccaggaggtgctggacatcgtgacggtgctcccttgcctgcca
aggctctgcaagcttgacctgagcagaaacagcttctctgtgtcaactctactccagttg
gtgaaggtggcagtcacatgtcctaatgtcacaatgctgcaggccagggagacagagctc
atctttgttctttctccgcccatggagtcagatgtggagctgtggagagctccagacctc
caggaaaatgtcagcccaaaaagagagactctggacagaaggctgacactcaggctccag
aaatgtcagctcagggactgcgatgtgcaagtcctcatagagctgctccgggaaggaccg
cacctggaggaagtggacctctcagagaaccatctggaagatgaaggctgtcaactcctg
gcagaggctgtaccccagctgcacatcaccaagaagttggacctcagtaacaacagactc
tccacatccggtgtggcttccgtgctgagggctgtggacacgtgccggagcctggcagag
ctgcacatcagtctgctgcacaaagctgtagtcctgatgtttgcccaggaggcaggggag
caggagggatcctgggaaagtgctgcacttctccacagccgctcacccctgggggcctcg
gagctgccctccagctcccgagacatcaggctgacgcactgcggcttccaggccaagcac
atacagaagctctgcaagatcctggggggataccggcgcccccaccaccctgtccagctg
cgtcatctcgacctatcaggcaacgccctgggagataatggggtggctctcttggcccag
ctgctcccaggcctggggcccctgcaatccttgaacctcagcgagaatggtacgtccctg
gccacggtgctcagcttggcccagtgcatggctaccctgccatgggttttccacgtggac
atcagctttgagaaccagcacatcctcctgacaggaaacaagacaggaaggggtgtattg
gctgctggaccttttccagagctccgggcaggaacccagatctcggggttcggccagcgc
tgcatcaccaggagcttctgcctcaaggagtgtccactgaacccccccagcctcactcgg
ctcttccactctctagaggcgtgcccagggccactggaaattcggttgtcctgcaaggcc
ctgagtgacaagagcctggagaccttgctgccttgcttgtcccggatgccccagccaagc
ctgctgcagctgagccagaagcagccatcgcctcggagcccctggctgctggctggcatc
ctccccctgagccctcggcttcggaagctggagatcaggtccctgaatcaagcaacccta
cacttcggatgcaaggaggagccacaaggcctggactgtgggttcccgggctgcagcctc
ggcccagtacatgtggagcagctgtgccacttgctgggcaggtgtaaagccctcagccac
ctggacctggacgcaaacctgctgggcgaccaggggctcagcgctctcctggagctcctg
cggcagacccccctctcggggtggcttgacttgagtcacaatggcatctctcaggagggc
gtgctgagcctggtggagaatctgcctgccaaccctcgcgtccgggaggccttggtgaac
ctgggccccgagcagctcttccagcttcgcttctccaggcaggaggcgacgtgtggagtg
acactgaggctgagccactgccacttgaggacggagcacatacccagactggctgctggc
ttgagccacaccccccagcccacggagctcacgctcaccgaggacagcttggacctgaca
cagctggcagtgctcctgagccgggtgaagcgtccagcaggggtgctggggctcaggctc
gaggagccctgggtgggcagcgccagcgccaacgtgcccgacctgctgagagtctgcgcc
caggcctcgggccacgtcaccgagatgagcacctccgagacacagctgtggctgcagctg
gaattccctcgggaggaagaggatccccagggggccctcaggctgggaccccccatagac
cccgggaccccacaccaccatctcaccacacagctgatggagacatgtggcaggctgcgg
cagctcagcttgtcccaggttaacctgtgccgcgaggatatcaccagctccgggctgctg
ctgagcctcctgccagccctctctgagctgcaaaccttccggctgacctccagctgcggg
agctccgaaggcctcatccacctggtgtccggcctgagtagctgccaccatgtggaggag
ctggacttctccaactgtcagttcggtgaggagggcatctgggtgctgatggcggccctg
gagggaaagcgcaggctgaagaggctccgactgaatgagaacagcattggtgacacaggc
tgctgtcacctctcccaggctctcagagcttctggcagcttggaggagctgggcttgagc
cacaaccagattggagacattggagcccagcacatagctgccgccctgccagagctgcct
gagctcaggaagatagacctctcaaggaacggcatcagcccagtggcaggagcccagcta
gcagaatcgctcaccctctgccagcacctggaggcgctgatgcttggctacaatgctctg
ggggatcccacggccctgcagctggctcaggggctgccgccgcacctgcgggtcctccac
ctgccatgcagccatctgggcccagagggggcactgagcctgggccgggccctggatgga
cacccacatgtggaagagatcaacttggcagagaacaacctggccaagggtaccccactt
ttctacaagggactcccacagctcaggaggatttccttggtttcctgcaaaatccatgac
cagactgccaaacccctggccaccagcttcatgctctgcccagccctggaagaaatactg
ctgtcctggaatctccttggggacgcagcggctgcagagctggcccgggtcctgcctcag
atgggccagctgaagaaagtagacctggagaagaatcagatctcggcccgtggagcctgg
cttctgcttcaagggctggcctgggtggctggcgagccggtcatccgcctctggaacaat
cctatccccgctgacatggccgagcatctgcagagccaggagcccaggctgaactttgcc
ttctttgacaagcagccctga
DBGET
integrated database retrieval system
