Perognathus longimembris pacificus (Pacific pocket mouse): 125358756
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Entry
125358756 CDS
T08928
Symbol
Pdzrn3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
plop04121
]
125358756 (Pdzrn3)
Enzymes [BR:
plop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125358756 (Pdzrn3)
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
125358756 (Pdzrn3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
Sina_ZnF
zf-C3HC4_3
zf-TRAF
zf-C3HC4_4
zf-RING_5
TRAF3_RING
Prok-RING_4
PDZ_Tricorn
zf-RING_10
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
125358756
NCBI-ProteinID:
XP_048212124
LinkDB
All DBs
Position
10:complement(60496707..60699708)
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AA seq
1079 aa
AA seq
DB search
MGFELDRFDGDVDPDLKCALCHKVLEDPLTTPCGHVFCAGCVLPWVVQEGSCPARCRGRL
SAKELNHVLPLKRLILKLDIKCAHAARGCGRVVKLQELPEHLERCDFAPARCRHAGCGQV
LLRRDVEAHMRDACDARPVGRCQEGCGLPLTHGEQRAGGHCCARALRAHNGALQARLGAL
HKALKKEALRAGKREKSLVAQLAAAQLELQMTALRYQKKFTEYSARLDSLSRCVAAPSGG
KGEETKSLTLVLHRDSGSLGFNIIGGRPCTDNQDGSSGEGIFVSKIVDSGPAAKEGGLQI
HDRIIEVNGKDLSRATHDQAVEAFKTAKEPIVVQVLRRTPRTKMYTPTAESQLVDTGTQT
DITFEHIMALSKMSSPSPPVLDPYLLPEEHSSAHEYYDPNDYMGDMHQEMDREELELEEV
DLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN
REEAVALLTSEENKNFSLLIARPELQLDEGWMDDDRNDFLDELHMDMLEEQHHQAMQFTS
SVFQQKKHEEDGGTTDTATIMSNQHEKDSGVGRTDESTRNDESSEQENNGDDAMAASSNP
LAGQRKLTCSQDTLGSGDLPFSNESFISADCTDVDYLGIPVDECERFRELLELKCQVKSA
SPYSLYYPGSPLEAGKGDPDSVDKELELLNEELRSIELECLSIVRAHKMQQLKEPCAREP
WMLHHSAFRNYNTSIDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLETSPDNS
LRRAVQGGPEAYGPSPKNLLAITEDPETTTPSYNHPAAAAQELDPSQSPESKDHRAGGGG
DGGGGGGGGGVRSPSASPPKLGGAYLSPYPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVE
YAQSQMSLVSMCKDLNSSPSSSEPRMEWKVKVRSDGTRYITKRPVRDRLLRERALRIREE
RSGMTTDDDAVSEMKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLDCLKEQQQQQQQP
GADDRKEVNILELSHKKMMKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgagctggaccggttcgatggcgacgtggacccggacctcaagtgcgcgctg
tgccacaaggtcctggaggacccgctgaccaccccgtgcggccacgtcttctgtgcgggc
tgcgtgctgccctgggtggtgcaggagggcagctgccccgcgcgctgccgcggtcgcctg
tcggccaaggagctcaaccacgtcctgcccctcaagcgcctgatcctcaagctggatatc
aagtgcgcgcacgcggcgcgcggctgcggccgggtggtcaagctgcaggagctgcccgag
cacctggagcgctgcgacttcgcgcccgcgcgctgccgccacgcgggctgcggccaggtg
ctgctgcggcgcgacgtggaggcgcacatgcgcgacgcgtgcgacgcgcggcccgtgggc
cgctgccaggagggctgcgggctgccgctgacgcacggcgagcagcgcgcgggcggccac
tgctgcgcgcgggcgttgcgggcgcacaacggcgcgctgcaggcccgcctgggcgcgctg
cacaaggcgctcaagaaggaggcgctgcgggccggcaagcgggagaagtcgctggtggcg
cagctggccgccgcgcagctcgaactgcagatgaccgcgctgcgctaccagaagaagttc
accgagtacagcgcgcgcctcgactcgctcagccgatgcgtggccgcgccgtcggggggc
aagggtgaagaaaccaaaagcctaactcttgtcctgcatcgagattctggctcccttgga
ttcaatattattggtggccggccttgtacggacaatcaagatggatcatccggtgaagga
atctttgtatccaaaatagttgacagtgggccggcagctaaggaaggaggcctgcagatt
catgacaggattattgaggtgaacggcaaagatttatccagagcaactcatgaccaggcg
gtggaagctttcaagacagccaaggagcccattgtggtacaggtactgaggaggacgcct
cggaccaaaatgtacaccccaactgcagagtcgcagctggtggacacaggcacccaaact
gacatcacctttgaacacatcatggcgctgagtaagatgtcttcccccagtccaccggtg
ctggacccctacctgctaccagaggagcactcctcagcccacgagtactacgatccaaat
gattacatgggggacatgcatcaggagatggacagagaagagctggagctagaggaagta
gacctctacagaatgaacagccaggacaagctgggcctcaccgtgtgctacaggacagac
gacgaagacgacattggcatttatataagtgagattgaccctaacagcatcgcagccaag
gatgggcgcattcgagaaggagatcgcatcatccagattaatggaatagaggtgcagaac
cgtgaagaggctgtggcccttctgaccagtgaagaaaataagaacttttcattgctgatt
gcaaggcctgaactccagctggacgagggatggatggatgacgacaggaatgactttctg
gatgagctgcacatggacatgcttgaggaacagcaccaccaggcaatgcagttcacatcc
agcgtgttccagcagaagaagcacgaggaagacggagggaccacagacacggccaccatc
atgtccaaccagcacgagaaggacagcggcgtggggaggacggacgagagcacccgcaac
gacgagagctcggagcaggagaacaacggcgacgacgccatggccgcctcctccaacccg
ctggcgggccagaggaagctcacctgcagccaggacaccctgggcagcggcgacctgccc
ttcagcaacgagtccttcatctcggccgactgcaccgacgtggattacctgggcatcccc
gtggacgagtgcgagcgcttccgcgagctgctggagctcaagtgccaggtgaagagcgcc
agcccctacagcctctactaccccggcagccccctggaggcgggcaagggcgaccccgac
agcgtggacaaggagctggagctgctcaacgaggagctgcgcagcatcgagctggagtgc
ctgagcatcgtgcgcgcgcacaagatgcagcagctcaaggagccgtgcgcgcgcgagccg
tggatgctgcaccacagcgccttccgcaactacaacaccagcatcgacgtgcgccgccac
gagctctccgacatcaccgagctgcccgagaagtcggacaaggatagctcgagcgcctac
aacaccggggagagttgccgcagcacgccgctcaccctggagacctccccggacaactcg
ctccgcagagccgtccagggagggccggaagcctacggcccatcccccaaaaacctgctg
gccatcaccgaggatcccgagaccaccaccccgagttataaccacccggcggcggcagcc
caagagctggaccccagccagtctccggagagcaaggatcaccgcgccgggggtggcggc
gatggcggcggtggcggcgggggcgggggcgtcaggagccccagcgccagccccccgaag
ctgggcggcgcctacctgtccccgtacccccactccccgtacaagcacgcgcacatcccg
gcgcacgcgcagcactaccagagctacatgcagctcatccagcagaagtcggccgtggag
tacgcgcagagccagatgagcctggtgagcatgtgcaaggacctgaactcgtccccgtcg
tcgtcggagccccgcatggagtggaaggtgaaggtccgcagcgacggcacgcgctacatc
accaagaggcccgtgcgcgaccggctgctgcgcgagcgcgcgctgcgcatccgcgaggag
cgcagcggcatgaccaccgacgacgacgcggtgagcgagatgaagatggggcgctactgg
agcaaggaggagcgcaagcagcacctggtgaaggccaaggagcagcggcgcaggcgcgag
ttcatgatgcagagccggctggattgtctgaaggagcagcagcagcagcagcagcagcca
ggggcggacgacaggaaggaggtgaacatcctggaactgagccacaagaagatgatgaag
aagaggaacaagaagatctttgataactggatgaccatccaggaactcctaacgcacggc
accaagtccccagacggcaccagagtgtacaattctttcctgtcggtgactactgtataa
DBGET
integrated database retrieval system
