Perognathus longimembris pacificus (Pacific pocket mouse): 125358827
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Entry
125358827 CDS
T08928
Symbol
Mbd4
Name
(RefSeq) methyl-CpG-binding domain protein 4 isoform X1
KO
K10801
methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
125358827 (Mbd4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
plop03036
]
125358827 (Mbd4)
03400 DNA repair and recombination proteins [BR:
plop03400
]
125358827 (Mbd4)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
125358827 (Mbd4)
DNA repair and recombination proteins [BR:
plop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
125358827 (Mbd4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MBD
HhH-GPD
Motif
Other DBs
NCBI-GeneID:
125358827
NCBI-ProteinID:
XP_048212261
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All DBs
Position
10:complement(69541076..69549880)
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AA seq
542 aa
AA seq
DB search
MASPSPGVSCGDGLGDLSEEVAAVELGNAGGAEIPVTLRRSPEGGPPEACPAEAAAATGF
GGPTVTAGQRPVPCGWERVVKQRLAGKTAGRFDVYFIGPQGQKFRSRRSLANYLHKNGDT
SLKPEDFDFTVLSERIIKSEHKDCSLAALSSQLQKESDVSNLNLRTRSRRKRNGGGLSTC
NPTHLLLKEDEVVHDVKLRKVRKSKRKVTVLKEIPDKKTKKGCRKHLPDSVQSKRKKGSV
SDQTGARNEPVAQESQPDRTSCLPDTRASDQPLRVTGEERSLVKETSLSSGSDFHVEQIT
SGIPNKSCPTTEAADGTGEEIRTEAADGDRKQHLHTDVLKCGSEMLNCSQAKNSPISEKM
LPDNAIPQAQIEKRKTSLYFSNKYNKEAPSPPRRKAFKKWTPPRSPFNLVQETLFHDPWK
LLIATIFLNRTSGKMAIPVLWKFLEKYPSADVARAADWRDLSELLRPLGLYDLRAKTIIK
FSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHGKLS
LS
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtcccagcccgggggtctcgtgtggggacggcctcggcgatctcagtgaggag
gtagctgctgtggaattgggaaacgcgggtggagctgaaattccggtgaccctaaggaga
agccctgagggtggccccccagaagcctgtcccgcagaagccgccgccgccactggcttc
gggggtcccacggtgacagcgggccagaggcccgtcccctgtggatgggaacgagttgtg
aagcaaaggttggctgggaaaacagcaggaagatttgatgtgtactttatcggcccacaa
ggacagaagttccgatccagaaggtcacttgctaattatcttcataaaaatggagacact
tctcttaaaccagaagattttgattttactgtactgtctgaaagaatcatcaagtcagaa
cataaagactgcagcctggcagctctgtcttcccaactgcaaaaggaaagtgacgtttca
aatctgaacctcaggacacgaagcaggaggaaaagaaatggtggaggtctgtcaacctgt
aatcccacccatttacttttgaaagaagatgaagttgttcatgatgttaagctcaggaag
gtaaggaagtccaaaagaaaggtgactgttttgaaagaaattccagataagaaaaccaaa
aaagggtgcaggaagcatcttccagattctgttcaaagtaagagaaaaaaaggatctgta
tctgatcaaacaggtgccagaaatgagcctgttgcacaagaaagccagcctgacagaacg
tcctgccttcctgacaccagagcaagcgaccagcccctccgtgtgaccggggaagaaagg
agccttgtcaaagagacctctctgagttcaggatcagactttcatgttgaacaaatcact
tctggcatcccaaacaaatcatgtccgaccacagaagcagccgatgggacgggggaggag
atcagaacagaagcagccgatggggacaggaagcagcatttgcatactgacgttttaaaa
tgtggctctgaaatgctcaactgctcacaggccaagaacagcccgatttccgagaaaatg
ctcccagacaatgccatcccacaagcacaaatagaaaaaaggaaaacaagcctgtatttt
tccaacaagtataacaaagaagctcctagccccccacgacgcaaagcctttaagaaatgg
actcctcctcggtcaccttttaatcttgttcaagaaacgcttttccacgacccatggaag
ctcctcattgcaactatatttctcaaccgcacctcgggcaaaatggcaatccctgtgctc
tggaagtttctagagaagtacccctcagccgatgtcgcaagagctgcagactggagagac
ctgtcagaactccttcggcctctcggtctctatgatctccgtgcgaaaaccattatcaag
ttctcagatgagtacctaacaaagcagtggaagtatcccattgagctccacggcattggg
aagtacggcaatgactcttaccggatcttctgcgtcaatgagtggaagcaggtgcaccct
gaagaccacaaattaaataaatatcatgactggctttgggaaaatcatggaaaattaagt
ctgtcttaa
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