Perognathus longimembris pacificus (Pacific pocket mouse): 125358992
Help
Entry
125358992 CDS
T08928
Symbol
Rtcb
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
plop03016
]
125358992 (Rtcb)
Enzymes [BR:
plop01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
125358992 (Rtcb)
Transfer RNA biogenesis [BR:
plop03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
125358992 (Rtcb)
Prokaryotic type
tRNA splicing ligases
125358992 (Rtcb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
125358992
NCBI-ProteinID:
XP_048212377
LinkDB
All DBs
Position
1:11048951..11065577
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMDDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARISS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagttcctggagaagatcaataaaaactgctgg
aggatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
gctctggagaaattgatgttcgaggaactaaggaatgcctgtcggggtggtggtgttggt
ggcttcctaccagccatgaagcagataggcaatgtggcagccctgcctgggattattcac
cgatctattggtcttcctgacgtccactcgggctatggatttgccattgggaatatggca
gccttcgacatggatgatccagaagccgtggtttccccaggtggcgtcgggtttgacatc
aactgtggtgtccgcttgctaagaaccaatttggacgaaagtgacgtccagcctgtgaag
gagcagcttgcccaggctatgtttgaccacatccctgttggggtgggatcaaaaggagtc
atcccgatgaatgccaaagacttggaggaggccttggagatgggtgtggattggtcccta
agggaaggctatgcctgggccgaggacaaggagcactgtgaggagtacggaaggatgctg
caagccgaccccaacaaggtctccgccagggccaagaagagaggccttcctcagctgggg
accctgggagcaggcaaccactatgcagaaattcaggttgtggatgagattttcaatgag
tatgctgctaagaaaatgggcatcgaccataaggggcaagtgtgtgtgatgatacacagt
ggaagcagaggcttgggccaccaagtagccacagatgcactggtagctatggaaaaggct
atgaagagagacaagatcatagtcaatgaccgccagctggcttgtgctcgcatctcttcc
cctgaggggcaggactacctaaagggaatggcagcggctggaaactatgcctgggtcaac
cgctcttccatgaccttcttaacccgtcaggcttttgccaaggtcttcaacacaacgccc
gatgacctggacctgcatgtgatctatgacgtttctcacaatattgccaaagtggagcag
cacgtggtggacggaaaggagcggacgctgttggtgcaccggaagggctccacccgcgcc
ttccctcctcaccacccgctcatcgctgtcgattaccaactcactggacagcccgtgctc
attggcggcaccatgggaacctgcagttacgttctcacgggcactgaacagggcatgacc
gagacctttgggacaacctgtcatggagcgggccgtgcgctgtcccgagcaaagtctaga
cgcaatttagatttccaggatgtcttagacaaattggcagatatgggaatcgcaatccgt
gtggcttcacccaaactagttatggaagaggctcctgagtcctacaagaatgtgaccgat
gtggtgaacacctgccacgacgccggaatcagcaagaaggccatcaagctgagacccatc
gctgttatcaaaggctag
DBGET
integrated database retrieval system
