Perognathus longimembris pacificus (Pacific pocket mouse): 125359018
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Entry
125359018 CDS
T08928
Symbol
Rc3h1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plop03000
]
125359018 (Rc3h1)
04121 Ubiquitin system [BR:
plop04121
]
125359018 (Rc3h1)
Transcription factors [BR:
plop03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
125359018 (Rc3h1)
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125359018 (Rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
125359018
NCBI-ProteinID:
XP_048212418
LinkDB
All DBs
Position
11:26792632..26879938
Genome browser
AA seq
1132 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRKLLSASLGQLNEVGLPSAAMLPDE
GAVDLPSRKPSALPNGIVSSGNAVTQLIPRGTDASYDSSLKPGKIDHLSSSAPGSPPDVL
ESVPKSISALPVNPHPIPPRGPADLPPMPITKPLQMVPRGSQLYPAQQADVYYQDPRGAA
PPFEPAPYQQGMYYTPPPQCVSRFVRPPPSAPEPGPPYLDHYSPYLQDRVINSQYGTQPQ
QYPPMYPPHYDSRRVYPAQSYTREEIFRESPVPIEIPPAAVPSYVPESRERYQQVEGYYP
VAPHPTQIRPSYPREPPYSRLPPPSQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSP
TLPPAFHQEEFLDEELKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEM
MNLESKGMRDQRLDFQRRAVETSDDDLIPFGDRPTVSRFGAISRTSKTIYQGAGPIQAMA
PQGAPTKSINISDYSPYGTHGGWGGSPYSPHQNIATQGHFSERERISMSEVASHGKPLPS
AEREQLRLELQQLNHQISQQTQLRGLEAVSNRLVLQREANTLAGQPQPLPPPKWPGMISS
EQLSLELHQVEREIGKRTRELNMENQCSLDMKSKLNTNKQAENGQPEPQNKVPTEDLTLT
FSSDVPNGSALTQENISLLSNKTSSLNLSEDPEGGGDNNDSQRSGVTPSSAP
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggatttcctctcctgcccaatttgcactcaaact
ttcgacgaaacaattcgaaagcccatcagtttgggctgtggccatactgtctgcaagatg
tgcctgaataaactccaccgcaaggcttgcccttttgatcagaccactatcaatacagac
attgagctcctccccgtgaactcagcattgctgcagctagtaggtgctcaggttcctgag
cagcagcccattactttgtgtagtggggttgaagatacaaagcactatgaggaagccaag
aagtgtgtagaagaattagcattgtacctgaaacctctcagcagtgctagaggagtgggt
ctgaatagcactactcagagtgttctgagtcgcccaatgcagaggaagcttgtgacactg
gtccattgccaactagtggaagaagaaggccggattcgtgccatgagggcagctcgatct
ttaggtgaacgaacagttacagagcttattctccagcatcaaaatcctcaacaactctct
tccaacctttgggcagcagtcagggccaggggctgccagttccttggaccagcaatgcaa
gaagaagcacttaagctggttctactggcattggaagatggttctgccttgtcacgaaaa
gtgttggttctttttgtggtgcaaaggttggagccacggtttcctcaagcttctaaaaca
agcattgggcatgttgttcagctcctttatagagcctcctgcttcaaggtcactaaacga
gatgaagactcttctttgatgcagctgaaagaagaatttagaacttatgaagctctgagg
cgagaacatgactctcagatagtgcagattgctatggaagcaggtttaagaattgcacca
gatcaatggtcctctttgctttatggagaccaatctcacaaatcccatatgcagtccatt
attgacaagttgcagaccccagcctcttttgcccagagtgttcaggaactaacaattgct
ctccagcggactggagatccagcaaacttgaaccgactaagaccccatttggagctattg
gcaaacattgaccctagtccagatgctcctcctcctacttgggaacagctggaaaatgga
ctggttgctgtgcggacagtggtacatgggctggttgattacatccagaatcacagcaaa
aaaggagcagatcaacaacagcctccacagcatagcaaatataaaacctatatgtgtcga
gatatgaagcagagaggaggatgccctcgaggtgccagctgtacatttgcacactcacaa
gaggaactggaaaaatttcgtaaaatgaacaaacgtctggttcccagaaaactcctgagt
gcctccttgggtcaacttaatgaggtgggcctgccttcagcagctatgcttccagatgaa
ggcgcagtggatcttcctagcaggaaaccctctgctctgccaaatggaattgtatcatca
gggaatgcagtaacacagctgattccacgtgggacagatgctagctatgattctagtctg
aagcctggaaagatagatcatctgagcagtagtgctcctggatcccctcctgacgtgctg
gaatctgtccctaagagcatttctgccttacctgtgaatccacatcctatacccccaaga
gggccagcagacttgcctcccatgcctatcaccaaaccacttcaaatggtaccacgaggt
tctcagttatatccagcacaacaagcagatgtctattatcaggatcctcgaggagctgca
ccaccatttgaaccagcaccttatcagcagggtatgtactatactccaccaccacagtgt
gtgtcccgttttgtccgacctcctccatctgctcctgaacctggtcctccctacttggat
cattattcaccctacctccaagatcgtgtcataaactctcagtatggcacacaaccacaa
cagtacccacctatgtatccacctcactatgatagccgtcgagtatatcctgctcagtct
tatacaagagaggagattttccgagaaagccctgtacctattgagattccacctgcagca
gtaccatcctatgtaccagaatccagagaaagataccagcaggtggagggttactatcca
gtggctcctcatccaacccagatcagaccttcataccccagagaacctccatatagtcga
cttcctcctccttcacaaccccaccctagtctggatgagctacatcgccgaagaaaggaa
ataatggcccaacttgaggaaagaaaagttatctctccacctccttttgcaccttcacca
acattgcctcctgcattccatcaagaggaatttttggatgaagaattgaaggtagctggg
aaatacaaaggaaatgactatagccaatactctccttggtcatgtgataccatcggctcc
tacattggaaccaaagatgcaaaacccaaagatgttgtggcagcagggagtgtggaaatg
atgaacttggaaagtaaaggtatgagagaccagcgattggattttcaaagacgagcagta
gaaaccagtgatgatgacctcattccatttggagatcgaccaacagtatctcggtttggt
gccatctctcgaacttccaaaacaatatatcaaggtgctggcccaatacaggctatggca
cctcagggagctcccacaaaatctattaacatttcagattacagtccatatggaacccat
ggaggttggggaggttctccatattcacctcatcaaaacatagctactcagggacacttc
agtgagagggagagaatatcaatgtcagaagtggctagtcatggaaaaccccttccatct
gctgagagagaacaactgcgactagaattacagcaactgaaccatcagattagccaacag
acccaactccgtggactagaggctgttagtaacaggctggtgttacaaagggaggcaaac
accttggcaggccagccacaacccctaccacctccaaaatggcctggaatgatctcaagt
gagcagttgagcttagaacttcaccaggtggaaagagaaattgggaaaagaacccgggaa
ctaaatatggagaaccagtgctctctggacatgaaaagcaagttgaacacaaacaagcag
gcagaaaatggacaaccagaaccacaaaacaaagttccaactgaggatcttacattgaca
ttcagcagtgatgttccaaatggatcagccttgacgcaagagaatatcagcctcctgtca
aacaagaccagctctctaaacttatcagaagaccctgagggaggaggagataacaatgac
tcccagagatccggagttactcccagttctgctccctaa
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