Perognathus longimembris pacificus (Pacific pocket mouse): 125359094
Help
Entry
125359094 CDS
T08928
Symbol
Copa
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125359094 (Copa)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
plop04147
]
125359094 (Copa)
Membrane trafficking [BR:
plop04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
125359094 (Copa)
Exosome [BR:
plop04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125359094 (Copa)
Exosomal proteins of bladder cancer cells
125359094 (Copa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
125359094
NCBI-ProteinID:
XP_048212574
LinkDB
All DBs
Position
11:36635036..36684129
Genome browser
AA seq
1224 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESD
VRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
PNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK
RTLASVNISKVKYVIWSADMSHVALLAKHAIVICNRKLDALCNIHENIRVKSGAWDESGV
FIYTTSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLTIDPTEFKFK
LALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEI
ALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMM
KIAEIRKDMSGHYQNALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEAESLKETFDP
EKETIPDIDPNAKLLQPPAPIMPLDTNWPLLTVSKGFFEGSIASKGKGGALAADIDIDTV
GTEGWGEDAELQLDEDGFVEAPEGLGDDALGKGQEEGGGWDVEEDLELPPELDVSPGAAG
GAEDGFFVPPTKGTSPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVVQFGPYKQLFL
QTYARGRTTYQALPCLPSMYSYPNRNWKDAGLKNGVPAVGLKLNDLIQRLQLCYQLTTVG
KFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLCMEIERKKLPKETLEQ
QKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQQ
TRKILSACEKNPTDAYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQI
CRVTTVTEIGKDVIGLRISPLQFR
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccaaattcgagaccaagagcgcgcgggtcaaagggctcagttttcaccccaaa
agaccatggatcctgaccagcttacataatggagtaatacagttatgggactatcgaatg
tgcaccctcattgacaagtttgatgaacatgatggtccagtgcgaggcattgacttccat
aaacagcagccactgtttgtctctggaggagatgactataagattaaggtttggaattac
aagcttcgacgctgtctcttcacattgcttggacacttggattatatccgaaccacattt
tttcatcatgagtatccatggattctgagtgcctcggatgatcagaccattcgagtgtgg
aactggcaatctagaacctgtgtctgtgtgttaacgggccacaatcattatgtaatgtgt
gctcagttccacccctccgaagacttggttgtatcagctagcctggaccagactgtacgc
gtttgggatatttctggtctgagaaaaaaaaatttgtctcctggagcagtggagtcggat
gtaagaggaataacaggggttgatctttttggaactacagatgcagttgtgaaacatgta
ctagagggacatgatcgtggggtaaactgggctgccttccaccctactatgccccttatt
gtatctggagcagatgaccgacaagtgaagatctggcgcatgaatgaatcaaaggcatgg
gaggttgacacctgtcgaggtcattacaataatgtgtcttgtgctgtcttccatcctcgc
caagagttgattcttagcaattctgaggataagagtattcgagtctgggatatgtctaag
cggactggtgttcagaccttccgtagggaccatgatcgtttctgggtcctagctgctcac
cccaaccttaacctctttgcagcaggacatgatggtggcatgattgtgtttaagctagaa
cgggaacggccagcctatgctgttcatggcaatatgctgcattatgtcaaggaccgattc
ttacgtcagctggatttcaatagctccaaagatgtagctgtgatgcagttgcggagtggt
tccaagtttccagtgttcaatatgtcatacaatccagcagaaaatgcagtcctactgtgt
acaagagccagcaatttagagaatagtacctacgatctgtataccatccccaaagatgcc
gactcccagaatcctgatgcccctgaagggaaacgatcctcaggcctgacagccgtttgg
gttgctcgaaatcgatttgctgtcctagatcggatgcattcgcttctgatcaagaatttg
aagaatgagatcaccaaaaaggtacaggtgcccaactgtgatgagattttctatgctggc
acaggcaacctcctgcttcgagatgcagattctatcacactctttgatgtacaacagaaa
cggactctggcatctgtgaatatttccaaggtgaaatacgtcatctggtcagcagacatg
tctcatgtggcactactagccaaacatgccattgtgatctgtaaccgcaaactggacgct
ctgtgtaatattcatgagaacattcgtgtcaagagtggggcctgggatgagagtggggta
tttatctataccacaagcaaccacatcaaatatgctgtcaccaccggagaccatgggatc
atccggactctggatttacccatctatgtcacacgagtaaagggcaacaatgtatactgc
ctagacagggagtgtcgtcctcgggtactcaccattgatcctactgagttcaaattcaag
ctggctttgatcaatagaaaatatgatgaggtactgcacatggtgaggaatgccaaatta
gtaggccagtctatcattgcttatctccagaagaaggggtatcctgaagtggcattgcac
ttcgttaaggatgaaaaaactcgctttagtctggcactggagtgtggaaacattgagatt
gctctggaagcagccaaagcactggatgacaagaactgttgggagaaactgggagaagtg
gccctgctacaagggaaccaccaaattgtggaaatgtgctatcagcgcaccaaaaacttt
gacaaactttccttcctgtaccttatcactggcaacctggagaaacttcgcaagatgatg
aagattgctgagatccgaaaggacatgagtggccattatcagaatgcactctacttgggt
gatgtgtcagagcgagtgcggatcctgaagaactgtgggcagaagtccctggcctatctc
acagctgctacccatggcttagatgaagaagctgagagcctgaaggagacatttgatcca
gagaaagagacaatcccagacatcgaccctaatgccaagctgctccaaccacctgctcca
attatgccattagatacaaattggcccttattaactgtgtccaaaggattctttgaaggc
tctattgccagcaaggggaagggaggagcactggctgctgacattgacattgacactgtt
ggtactgaaggctggggagaagatgcagaactgcagctggatgaagatggatttgtggag
gctccagaaggtttgggggatgatgctcttggcaaggggcaggaagaaggaggtggttgg
gatgtagaggaagatctggagcttccccctgaattggacgtatccccaggagcagctggt
ggggctgaagatggtttctttgtgcccccaaccaaagggacaagtccaactcaaatctgg
tgcaataactcacagcttccagttgatcacatcctggcaggctcttttgaaacagccatg
cggcttcttcatgaccaggtaggagtagtgcaatttggcccctacaagcaactgttcctg
cagacatatgctcgaggccgtacaacctatcaggctcttccctgcttgccctccatgtat
agctaccccaatcgaaattggaaggatgcgggcctgaagaatggtgtgccagctgtgggc
ctgaagcttaatgacctcatccaacgattgcagctgtgctaccagctcaccacggttggc
aagtttgaggaggctgtagaaaagttccgttcaatcctactcagtgtgccacttctagtt
gtggacaataaacaggagattgcagaggcccagcagctcatcaccatttgccgtgaatat
attgtgggtttgtgcatggagatagaaaggaagaagctgcccaaagagactttagaacag
cagaaacgcatctgtgagatggcagcctatttcacccactcaaatctgcagcctgttcac
atgatcctggtgctgcgaacagccctcaacctcttctttaagctcaagaacttcaagaca
gcagccacttttgctcggcgcctcctggaacttgggcccaagcctgaagtagctcaacag
acccgaaaaatcctgtctgcctgtgagaagaatcctacagatgcctaccagctcaattat
gacatgcacaacccctttgacatttgtgctgcatcctatcggcccatctaccgtggaaaa
ccagtggagaaatgtccactcagtggggcttgctattcccctgagttcaagggtcaaatc
tgcagggtcactacagtgacagagattggtaaagacgtgattggtctgaggatcagtcct
cttcaatttcgctaa
DBGET
integrated database retrieval system
