Perognathus longimembris pacificus (Pacific pocket mouse): 125359405
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Entry
125359405 CDS
T08928
Symbol
Rorc
Name
(RefSeq) nuclear receptor ROR-gamma isoform X1
KO
K08534
RAR-related orphan receptor gamma
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04659
Th17 cell differentiation
plop04710
Circadian rhythm
plop05321
Inflammatory bowel disease
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
125359405 (Rorc)
09159 Environmental adaptation
04710 Circadian rhythm
125359405 (Rorc)
09160 Human Diseases
09163 Immune disease
05321 Inflammatory bowel disease
125359405 (Rorc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plop03000
]
125359405 (Rorc)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
plop03310
]
125359405 (Rorc)
Transcription factors [BR:
plop03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
125359405 (Rorc)
Nuclear receptors [BR:
plop03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
125359405 (Rorc)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
DDE_Tnp_1_7
Motif
Other DBs
NCBI-GeneID:
125359405
NCBI-ProteinID:
XP_048213075
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All DBs
Position
11:42847932..42870369
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AA seq
532 aa
AA seq
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MDRAPQRHHRASRELLAAKKTHTWPMKRDITKIEGKILAQIEVIPCKICGDKSSGIHYGV
ITCEGCKGFFRRSQQCNVAYSCTRQQNCPIDRTSRNRCQHCRLQKCLALGMSRDAVKFGR
MSKKQRDSLHAEVQKQLQQQQQQQEQVAKTPPVGGHGAEILTYTLGLPDGQLPLGASPDL
PEASACPPGLLRASGSGLPYSSNLAKTEPKGASCHLEYSPERAKAEARESIYRRDSQITP
GKCGLPLEGPRHSGFGDPEQGPDGYCSPNFCSTPEAPYASLTEIEHLVQNVCKSYRETCQ
LGLEDLLRQRNNLFSREEVTGYQRKSMWEMWERCAHRLTEAIQYVVEFAKRLSGFMELCQ
NDQIILLKAGAMEVVLVRMCRAYNADNHTVFFEGKYGGMELFRALGCNELISSIFDFSHS
LSALRFSEDEIALYTALVLINANRPGLQEKRKVEQLQYNLELAFHHHLCKTHRQGILAKL
PPKGKLRSLCSQHVEKLQIFQHLHPIVVQAAFPPLYKELFGTEIESPEGLSK
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggacagggccccacagagacaccaccgagcctcaagggagctgctggctgcaaagaag
acccacacttggccaatgaagagagatatcaccaagatagaggggaagatattagctcaa
attgaagtgatcccttgcaaaatctgtggggacaagtcatctgggattcattacggggtt
atcacctgtgaggggtgcaagggcttcttccgtcggagccagcagtgtaatgtggcctac
tcctgcacccgccagcagaactgccctattgaccgcaccagccgtaaccgatgccagcac
tgccgcctgcagaagtgcctagcactgggcatgtcccgagatgctgtcaagtttggccgc
atgtccaagaagcagagggacagcctgcatgcagaagtgcagaaacaactccagcagcag
caacaacaacaggaacaagtggccaagactcctccagtagggggccatggagcagaaatc
ctcacctacaccttggggctccccgatggccagctgcctttgggcgcctcacctgacctg
cctgaggcctctgcctgtcctccaggtctcctgagggcctcaggctctggactgccatat
tctagcaacttggccaagacggagcccaaaggggcctcctgccaccttgagtacagccct
gagagggccaaggctgaggctagagagagcatctatagaagagacagccagattactcct
ggcaagtgtggacttcctttggaggggcccaggcactctgggtttggggacccagaacag
ggtccagatggctattgcagccccaatttctgcagcaccccagaggcaccatatgcctct
ctgacagagatagaacatctggtacagaatgtctgcaagtcctaccgagagacatgtcag
ttggggctcgaagacctactacggcagcgtaataacctcttctcccgggaggaggtgact
ggctaccagaggaagtctatgtgggagatgtgggagcgctgtgcccaccgcctcactgaa
gccattcagtatgtggtggagtttgccaagcggctctcaggctttatggagctctgccag
aatgaccagatcatactactgaaagcaggagcaatggaggttgtgctggtcaggatgtgc
cgggcctacaatgctgacaatcatacggtcttttttgaaggcaaatacggtggcatggag
ctgtttcgagccttgggctgcaatgagctcatcagctccatcttcgacttctcccactcc
ctcagtgccttgcgcttttccgaggatgagattgccctctacactgcccttgttctcatc
aatgccaacagaccagggctccaagagaaaaggaaagtggagcagctgcagtacaatctg
gagctggccttccatcatcatctctgcaaaactcatcgccaaggcatcctggcaaagctg
ccacccaaaggaaagctccggagcctgtgcagtcaacatgtagaaaagctgcagatcttc
caacacctccatcccattgtggtgcaagctgcttttcctccgctctacaaggaactcttt
ggcactgaaatcgagtctcctgaggggctatccaagtga
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