KEGG   Perognathus longimembris pacificus (Pacific pocket mouse): 125359756
Entry
125359756         CDS       T08928                                 
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 2-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
plop  Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03082  ATP-dependent chromatin remodeling
plop03083  Polycomb repressive complex
plop04110  Cell cycle
plop04213  Longevity regulating pathway - multiple species
plop04330  Notch signaling pathway
plop04350  TGF-beta signaling pathway
plop04613  Neutrophil extracellular trap formation
plop04919  Thyroid hormone signaling pathway
plop05016  Huntington disease
plop05031  Amphetamine addiction
plop05034  Alcoholism
plop05165  Human papillomavirus infection
plop05169  Epstein-Barr virus infection
plop05200  Pathways in cancer
plop05202  Transcriptional misregulation in cancer
plop05203  Viral carcinogenesis
plop05206  MicroRNAs in cancer
plop05220  Chronic myeloid leukemia
Brite
KEGG Orthology (KO) [BR:plop00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    125359756
   03083 Polycomb repressive complex
    125359756
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    125359756
   04350 TGF-beta signaling pathway
    125359756
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    125359756
 09150 Organismal Systems
  09151 Immune system
   04613 Neutrophil extracellular trap formation
    125359756
  09152 Endocrine system
   04919 Thyroid hormone signaling pathway
    125359756
  09149 Aging
   04213 Longevity regulating pathway - multiple species
    125359756
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    125359756
   05202 Transcriptional misregulation in cancer
    125359756
   05206 MicroRNAs in cancer
    125359756
   05203 Viral carcinogenesis
    125359756
  09162 Cancer: specific types
   05220 Chronic myeloid leukemia
    125359756
  09172 Infectious disease: viral
   05169 Epstein-Barr virus infection
    125359756
   05165 Human papillomavirus infection
    125359756
  09164 Neurodegenerative disease
   05016 Huntington disease
    125359756
  09165 Substance dependence
   05031 Amphetamine addiction
    125359756
   05034 Alcoholism
    125359756
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:plop03036]
    125359756
Enzymes [BR:plop01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     125359756
Chromosome and associated proteins [BR:plop03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     125359756
   HDAC complexes
    Sin3A-HDAC complex
     125359756
    BRAF-HDAC complex
     125359756
    REST complex
     125359756
    SHIP complex
     125359756
    MiDAC complex
     125359756
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     125359756
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    125359756
  Chromatin remodeling factors
   NuRD complex
    125359756
SSDB
Motif
Pfam: Hist_deacetyl Peptidase_C101
Other DBs
NCBI-GeneID: 125359756
NCBI-ProteinID: XP_048213610
LinkDB
Position
11:complement(10655176..10656154)
AA seq 316 aa
MGYSQGGGKKKVCYYYDGDTGNYYYGQGHPTKPHRIQMTHNLLLNYGLYRKIEIYRPHKA
TAEEMTKYHSDEYIKLIRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVR
GAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDVVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRDXLFPSTRDLRDTGAGKGKYYAVNFPMRDGIEDESYGQIFKPIISKV
MKTYQPSAVVLQCGADSLSEDRLGCFNLTVKGHDKCVEVVKTFNLPLLMLGGGGYTICNV
ARCWTYETAVGNSVLF
NT seq 951 nt   +upstreamnt  +downstreamnt
atggggtacagtcaaggaggcggcaagaagaaagtctgctactattacgatggtgatact
ggaaattattattatggacagggtcatcccacgaaaccacacagaattcagatgactcat
aacttgctgttaaattatggtttatacagaaaaatagaaatatataggccccataaagcc
actgctgaagaaatgacaaagtatcacagtgatgagtatatcaaattaatacggtcaata
agaccagacaacatgtctgagtatagtaaacagatgcagagatttaatgttggagaagat
tgtcccgtgtttgatgggctctttgaattttgtcaactctccactggtggttcagttcgt
ggggctgtgaaattgaaccgacaacaaactgatatggctgtcaactgggctggaggatta
catcatgccaagaaatcggaagcatcaggattctgttatgtgaatgatgttgtgcttgct
atccttgagttacttaagtatcatcaaagggtcttatatattgacatagatatccatcat
ggtgatggtgttgaagaagctttttatacaacagatcgtgatngactgtttccttccaca
agagacttgagggatactggtgctggaaagggcaaatattatgctgtcaattttccaatg
agagatggtatagaggatgagtcatatgggcagatatttaagcctatcatctcaaaagtg
atgaagacgtatcaacccagtgctgtggtattgcaatgtggtgcagattcattatctgag
gatagacttggttgcttcaacctaacagtcaaaggtcatgataagtgtgtagaagttgta
aaaacttttaacttaccattgttgatgcttgggggaggtggatacacaatctgtaacgtt
gcaagatgttggacatatgagacagcggttgggaactctgtgttgttttga

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