Perognathus longimembris pacificus (Pacific pocket mouse): 125360127
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Entry
125360127 CDS
T08928
Symbol
Taf1a
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit A isoform X1
KO
K15212
TATA box-binding protein-associated factor RNA polymerase I subunit A
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plop03021
]
125360127 (Taf1a)
Transcription machinery [BR:
plop03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
125360127 (Taf1a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TAF1_subA
COG4_N
Intron_maturas2
NEW1_HB
Motif
Other DBs
NCBI-GeneID:
125360127
NCBI-ProteinID:
XP_048214119
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Position
11:45748814..45774819
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AA seq
462 aa
AA seq
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MTEEQEEFGADRSDFSEELTRPATEDDDQMETSVVSSAGMHFPWLQKKLDTVATGGKKEK
DFAQTTSACLSFIQEALLKHQWQRAAEFMHSYLQILEDSDSHKRQAAPEIIWKLGSEILF
YHPKSNVETFNTFADRMKNIGVLNYLKISLQHALYLIHHGMLEDANRNLSQAETWRYGEK
SASQEIIMNLVQAYKGLLQYYSWSKKKMELSKLDKDDYAYSTKSQNILNQSWKTSTHIGA
LIKIPGVWDPFVKSYVEMLEFYGDHDGARKVLTNYAYDAKFPSNPNAHIYLYNFLKREKA
PKAKLISVLKILYEIVPSHQLMLEFHVLLRKSEKEEHRKLGLEVLFGILDFAGCTKNITA
WKYLAKYLKQVLIESHPAWVQEQWNSRKTWWPTFHFSYFWAKCDWKEDTDLACEKAFVAG
ILLGKGCRYFRYILKQDHQVLRKKIKQMKKSVKKYSIVNLGI
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgacagaggaacaagaagagtttggagcagataggagtgatttcagtgaagaattgaca
aggcctgcgacagaggatgatgaccaaatggaaacttcggtggtctccagtgcaggaatg
cactttccttggcttcaaaagaaattagacactgtagcgactggagggaaaaaagagaag
gattttgctcagacaacaagtgcttgtttaagttttatccaagaagctttgctgaagcac
cagtggcagcgagctgcagagttcatgcacagttatttgcagatcttggaagattcagat
agccacaaaagacaggctgcacctgagattatttggaagcttgggagtgaaattctattt
tatcatcccaaaagcaacgtggaaactttcaatacctttgctgaccggatgaaaaacatt
ggtgtcttgaactatctaaagatctccttgcaacatgcattgtaccttatacatcatgga
atgcttgaggatgcaaacagaaatctaagtcaggcagaaacatggagatacggtgaaaag
tcagcttcccaggaaataataatgaaccttgttcaggcctacaaagggcttttgcagtac
tattcttggtctaaaaagaagatggaattgtcaaagcttgataaggatgattatgcttac
agcacaaaatcccaaaatatacttaaccagagctggaagacatctacgcatattggtgca
ttgattaaaattcctggagtttgggacccttttgtgaagagttatgtagaaatgctggaa
ttctatggtgatcatgatggagccaggaaagtcctcaccaattatgcctatgatgcaaag
ttcccatcaaatcccaatgcccacatctacttatacaactttctaaagcgagagaaggca
ccaaaagcaaaactgataagtgtgcttaagattttgtatgagattgttccatctcatcag
ctgatgctagaattccatgtattacttagaaaatcagaaaaagaagaacaccgtaaactg
ggtttggaagtgttatttgggattttggattttgctggatgcactaagaacataactgct
tggaaatatttggcaaaatatctgaaacaagtattaatagaaagtcatcctgcatgggtt
caagaacagtggaactccaggaaaacctggtggccaacctttcacttcagttacttttgg
gcaaaatgtgattggaaggaagacacagatttggcttgtgagaaagcttttgtggctgga
atattgttaggaaaaggttgcagatattttcggtatattttaaaacaagatcatcaagtg
ttaaggaagaaaattaagcaaatgaagaaatcagtgaaaaaatacagtattgtcaatctg
ggtatctga
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