Perognathus longimembris pacificus (Pacific pocket mouse): 125360497
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Entry
125360497 CDS
T08928
Symbol
Dcaf13
Name
(RefSeq) DDB1- and CUL4-associated factor 13
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
plop03009
]
125360497 (Dcaf13)
04121 Ubiquitin system [BR:
plop04121
]
125360497 (Dcaf13)
Ribosome biogenesis [BR:
plop03009
]
Eukaryotic type
90S particles
Other 90S particles
125360497 (Dcaf13)
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
125360497 (Dcaf13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sof1
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_IFT122_1st
eIF2A
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_IFT140_1st
MIOS_WD40
Beta-prop_NUP159_NUP214
KNTC1_N
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
125360497
NCBI-ProteinID:
XP_048214421
LinkDB
All DBs
Position
12:complement(26504948..26536809)
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AA seq
445 aa
AA seq
DB search
MKVKMLSRNPDNYVRETKLDLQRVPRNYDPTLHPFEVSREYVRALNATKLERVFAKPFLA
SLDGHRDGVNCLAKHPKSLSTVLSGACDGEVKIWNLTKRKCIRTIQAHEGFVRGICTRFC
GTSFFTVGDDKTVKQWKMDGPGYGEEEEPLHTILGKTVYTGIDHHWKDPAFATCGQQVDI
WDEQRANPICSMTWGFDSINSVKFNPIETFLLGSCASDRNIVLYDMRQATPLKKVILDMR
TNTICWNPMEAFIFTAANEDYNLYTFDMRALNTPVMVHLDHVSAVLDVDYSPTGKEFVSA
SFDKSIRIFPADKSRSREVYHTKRMQHVICVKWTSDSKYIMCGSDEMNIRLWKANASEKL
GVLTKREKAANDYNQKLKEKFQYHPHIKRISRHRHLPKSIYSQIQEQRIMKEARRRKEVN
RRKHSKPGSVPIVSEREKHVVAVVK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtgaagatgctgagccggaacccggacaattacgtccgcgaaaccaagttggac
ttacagagagttccaaggaactatgatcctaccttacatccttttgaggtctcacgagaa
tacgtaagagctttaaatgctacaaaactggaacgtgtgtttgcaaaaccgtttcttgct
tccttggatggtcacagagatggagtcaattgtctggcaaagcatccgaagagcttgtct
actgtcctttctggggcttgtgatggagaggttaaaatttggaacctaactaaacgaaaa
tgtatccgtactatacaagcacatgaaggttttgtacgaggaatatgtactcgcttttgt
ggtacttctttttttactgttggtgatgacaaaactgtgaagcagtggaaaatggatgga
cccggctatggagaagaagaagagccattgcatacaatattaggaaagacagtctatact
ggaattgatcatcactggaaagatcctgcatttgccacatgtggacagcaagtagacatt
tgggatgaacaaagagccaatcctatatgttcaatgacatggggatttgacagcataaat
agtgttaaatttaatccaattgagacatttctcttgggaagttgcgcttctgacaggaat
atagtactatatgatatgaggcaagccactcctctgaaaaaggttatcttagatatgaga
acaaatacaatttgttggaatcctatggaagctttcatttttactgcagcaaatgaagat
tacaacttgtatacttttgatatgcgtgcactgaacactccagttatggtccacttagat
catgtgtctgcagtgcttgatgtggactactcacccactgggaaagagtttgtgtctgcc
agttttgataagtctattcgaatcttccctgcggacaaaagtcgaagcagggaagtctat
cacacaaagcgaatgcagcatgttatctgtgtaaaatggacttctgacagcaagtacatc
atgtgtggatctgatgaaatgaacattcgtctgtggaaagctaatgcttctgaaaaattg
ggtgtgcttacaaagagagaaaaagcagccaatgattataaccagaagctgaaggagaaa
tttcagtatcatcctcatataaaacgtatttctcgtcatagacacctaccaaaatctatc
tatagccagatccaggagcaacgtattatgaaggaagctcgtcgacgaaaggaagtgaat
cgtcgtaaacacagcaaacctggatctgtgccaattgtgtcagagagggaaaagcacgta
gttgcagttgtaaaataa
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