Perognathus longimembris pacificus (Pacific pocket mouse): 125360622
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Entry
125360622 CDS
T08928
Symbol
Trpa1
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04750
Inflammatory mediator regulation of TRP channels
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09150 Organismal Systems
09157 Sensory system
04750 Inflammatory mediator regulation of TRP channels
125360622 (Trpa1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
plop04040
]
125360622 (Trpa1)
Ion channels [BR:
plop04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
125360622 (Trpa1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
ANK_LRRK2
Motif
Other DBs
NCBI-GeneID:
125360622
NCBI-ProteinID:
XP_048214618
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Position
12:50973127..51019126
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AA seq
1116 aa
AA seq
DB search
MKRSLRKMLRPAEKEPQGVVYQGVGNDMDNSFKVDFERSACKLQNYMRNLRKSNKDEDEN
VSTLHHAAAEGQVELMKMIIGGSSCEVLNAMDDYGNTPLHWAAENNQVESVKFLLSQGAN
PNLRNSNMMAPLHIAVQGMHNEITRVLTEHSTTNINLEGENGNTAVLTTCAKDNSEALQI
LLSKGAKLCKSNKWGDCPVHQAAFSGAKKCMELILKFGEQRGYSRESQINFVNNKKASPL
HLAVQSGDLEMIKMCLDNGAHIDLQENGKCMALHFAATQGATEIVKMMISSYSGSNDIVN
AVDGNHETLLHRASLFDHHELADYLISVGADINITDSEGRTPLLLATASASWNIVNLLLS
KGAKVDVKDHLGRNFLHLTVQQPYGLKNLQPEFMQMQPIKELVMDEDNEGCTPLHYACRQ
GVPVSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGM
TPLHLAAKNGHDKVVQLLLKKGALFLSDHNGWTALHHASMGGYTQTMKVILDTNMKCTDR
LDEEGNTALHFAAREGHARAVALLLNHDADIVLNKQQASFLHIALHNKRKEVVLTTIRSK
RWDECMKVFTHHSPSNRCPIMEMVEYLPECMKILLDFCMIPSTEDKSCRDYHIEYNFKYL
QCPLEFTKKITPTQEIIYEPLSIVNVMVQHNRIELLNHPVCKEYLMMKWCAYGFRAHMMN
LGSYCLGLIPMTLLVVHIKPGVAFNSTGIINESSDHLETLDTTNSYPIKVCMILVFLSSI
FGYCKEVTQIFQQKRNYFLDYNNALEWIIYTTSIIFVLPLFVNIPAHVQWQCGAIAIFFY
WMNFLLYLQRFENCGIFIVMLEVIFKTLLRSTGVFIFLLLAFGLSFYILLNLQDAFSSPL
LSLIQTFSMMLGDINYRDAFLEPFLREELTYPVLSFAQLIAFTMFVPIVLMNLLIGLAVG
DIAEVQKHASLKRIAMQVELHTSLEKKLPMWFLRKVDHKSTIVYPNRPRHGKILRLFNYF
FGTQETKQEIPNTDTCLEMEILKQKYRLKDLTSLLEKQHELIKLIIQKMEIISETEDEDN
HCSFQDSFKKERLEQMNSKWNFVLRAVKTKTHSPKH
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcagcctgagaaagatgctgcgaccagcggagaaggagccccagggcgtcgtc
taccagggcgtggggaacgacatggacaactcttttaaggtggattttgaaagaagtgca
tgtaaattgcaaaactacatgaggaacctaaggaaatcaaacaaagatgaggacgagaat
gtctccactttgcatcatgccgcagctgaaggtcaagttgaattgatgaagatgatcatc
ggtggctcttcctgtgaagtgctgaatgcaatggatgattatggaaacacccccctgcac
tgggctgcagagaacaaccaggttgaaagtgtgaagtttcttctcagccaaggagcaaac
ccaaatctccgaaacagcaacatgatggctcctcttcacatagccgtgcagggcatgcac
aatgagatcaccagggtcttaactgagcacagcactactaatattaatttggaaggagaa
aatggaaacaccgctgtattgaccacatgtgccaaagataatagcgaagcactgcaaatt
ttgttaagtaaaggagcaaagctctgtaaatcgaataagtggggagattgcccggtgcat
caggctgcattttcaggggccaaaaaatgcatggaactaatattaaagtttggtgagcag
agaggatatagccgggagtctcagatcaatttcgtgaataacaagaaagccagcccactc
cacctggcggttcagagtggtgacttagaaatgattaaaatgtgtctggacaacggcgca
cacatcgacctgcaagagaatggcaagtgcatggcccttcattttgctgcaacccaagga
gccactgagattgttaaaatgatgatctcttcgtactctggcagcaatgatattgttaat
gctgttgatggaaatcatgagacgctgttgcacagagcctcattatttgatcaccatgag
ctagcagactacttaatttcagtgggggcagatatcaacatcactgattcagaaggacgc
actcctctgctactagcaacggcatctgcatcttggaatattgtgaatttgctactatct
aaaggtgccaaggtagatgtaaaagatcatcttgggcgtaacttcttacatttgactgta
cagcaaccttatggattaaaaaatttgcaacctgagtttatgcagatgcaacctattaag
gagctagtgatggatgaagacaatgaagggtgtacccctctccattatgcatgcagacag
ggggtccctgtctctgtaaataacctacttggtttcaacgtgtctattcactcaaaaagc
aaagataagaaatcacccctgcactttgcagccagttatgggaggatcaatacctgtcag
aggcttctgcaagacataagcgacacgaggctcttgaatgagggggatctccatggcatg
actccgctccacctggctgcgaagaacggccatgataaagttgttcagcttctgctgaaa
aaaggagcactatttctcagtgaccacaatggctggacggctttgcatcatgcttccatg
ggtgggtacactcagaccatgaaggttattctggataccaatatgaagtgcacagatcgg
cttgatgaagaggggaacactgcactccactttgcggcacgggaggggcatgccagagca
gtggcacttcttctgaaccatgatgctgacatcgtgttgaataagcagcaggcctccttc
ctgcacattgcacttcataacaagaggaaggaggtagttctcaccaccatcaggagcaaa
aggtgggatgaatgtatgaaggttttcactcatcattctccatccaatagatgtccaatc
atggaaatggtagaatacctcccagaatgcatgaaaattcttttagatttctgcatgatt
ccgtccactgaggacaagtcctgccgagactaccatattgagtataatttcaagtatctt
cagtgtccactggaatttaccaaaaaaataacacctacacaggaaatcatatatgagccc
ctttcaattgtcaatgtcatggttcaacacaaccgcattgagcttctcaatcaccctgtg
tgtaaagaatatctaatgatgaaatggtgcgcctatggatttagagcccacatgatgaac
ctaggatcttactgtcttggtctcatacctatgacccttcttgtggtccatataaagcca
ggagtggctttcaattccactggaatcatcaatgaatctagtgatcacttggaaacattg
gacactacgaattcatatccaataaaagtctgtatgattttagttttcttatcaagtata
tttggatattgcaaagaagtgactcaaattttccaacagaaaaggaattactttctggac
tacaacaatgccttggaatggatcatctacacgacaagcatcatatttgtgctgcccttg
tttgtgaacataccagcgcatgtacaatggcaatgtggagccattgccatattcttctac
tggatgaacttcttattgtatcttcaaaggtttgaaaattgtggaatatttattgttatg
ttggaggtaatttttaaaaccttgttgcgatcaacaggagtctttatcttccttcttttg
gcttttggactcagcttttacattctcctgaatttacaggatgccttcagctcaccattg
ctttctttaattcaaactttcagcatgatgctaggggatattaattatcgagatgccttc
ctagagccatttttgagagaagaattaacatatccagttctctcctttgcacaacttatt
gccttcacaatgtttgtcccaattgtcctcatgaatttactgattggtttggcagttggt
gacattgctgaggtccagaagcatgcatcattaaagaggattgctatgcaggtggaactc
cacaccagcttagagaaaaagctgccaatgtggtttttacggaaagtagatcacaaatcc
accattgtgtatcccaacagacccagacatgggaagatattacgtctatttaattacttt
tttggtacccaagaaacaaaacaagaaataccaaacacagacacatgtctagaaatggaa
atattgaaacagaaataccggctgaaggacctcacttctctcttagaaaagcagcacgaa
ctcatcaaactcatcattcagaagatggagatcatctctgaaacagaggatgaagataac
cattgttcttttcaagacagtttcaaaaaagagcgcctggaacaaatgaatagcaaatgg
aatttcgtgttgagagcagtgaagacaaaaacacacagtcctaagcactag
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