Perognathus longimembris pacificus (Pacific pocket mouse): 125360664
Help
Entry
125360664 CDS
T08928
Symbol
Pabpc1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03015
mRNA surveillance pathway
plop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125360664 (Pabpc1)
09123 Folding, sorting and degradation
03018 RNA degradation
125360664 (Pabpc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125360664 (Pabpc1)
03041 Spliceosome [BR:
plop03041
]
125360664 (Pabpc1)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
125360664 (Pabpc1)
mRNA cycle factors
Stress granule specific factors
125360664 (Pabpc1)
Spliceosome [BR:
plop03041
]
Complex C
Other components
Complex C specific factors
125360664 (Pabpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_7
RRM_10
RRM_5
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
125360664
NCBI-ProteinID:
XP_048214652
LinkDB
All DBs
Position
12:28508222..28523199
Genome browser
AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ
RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctcgctctacgtgggggatctacacccc
gacgtgaccgaggcgatgctctacgagaagttcagcccggccgggcccatcctctccatc
cgggtctgcagggacatgatcacccgccgctccttgggctacgcgtatgtgaacttccag
cagccggcggacgcggagcgtgctttggacaccatgaattttgatgttataaagggcaag
ccagtacgcatcatgtggtctcagcgtgatccatcacttcgtaaaagtggagtgggcaac
atattcattaaaaatttggacaaatccattgataataaagcactgtatgatacattttct
gcttttggtaacatcctttcatgtaaggtggtttgtgatgaaaatggttccaagggctat
ggatttgtacattttgagacacaagaagcagctgaaagagctattgaaaaaatgaatggg
atgcttctaaatgatcgcaaagtatttgttggacgatttaagtctcgtaaggaacgagaa
gcagaacttggagctagggcaaaagaattcaccaatgtttacatcaagaattttggagaa
gacatggatgatgagcgccttaaggaactctttggcaagtttggacctgccttaagtgtg
aaagtaatgactgatgaaagtgggaaatccaaaggatttggatttgtaagctttgaaagg
catgaagatgcacagaaagctgtggatgagatgaacggaaaggagctcaatggaaaacaa
atttacgttggtcgagctcagaaaaaagtggagcgacagacagaactgaagcgcaaattt
gagcagatgaagcaagataggatcaccagataccagggtgttaacctttatgtgaaaaat
cttgatgatggtattgatgatgaacgtctccggaaagagttttctccatttggtacaatc
actagtgcaaaggttatgatggaaggtggtcgaagcaaagggtttgggtttgtatgtttc
tcctctccagaagaagccactaaagcagttacagaaatgaatggtagaattgtggccaca
aagccactctatgtagctttagctcagcgcaaagaagagcgccaagctcacctcactaac
cagtatatgcagagaatggcaagtgtacgagctgtgcccaaccctgtaatcaacccctac
cagccagcacctccttcaggttacttcatggcagctatcccacagactcagaaccgtgct
gcatactatcctcctagccaaattgctcaactaagaccaagtcctcgctggactgctcag
ggtgccagacctcatccattccaaaatatgcccggtgctatccgcccagccgctcctaga
ccaccatttagtactatgagaccagcttcttcacaggttccacgagtcatgtccacacag
cgtgttgctaacacatcaacacaaacaatgggtccacgtcctgcagctgctgctgcagca
gccactcctgctgtccgcaccgttccccagtataaatatgctgcaggagtccgcaatcct
cagcaacatcttaatgcacagccacaagttaccatgcaacagcctgctgttcatgtacaa
ggtcaggaacctttgactgcttccatgttggcatctgccccccctcaagagcaaaagcaa
atgttgggtgaaaggctatttcctcttatccaagccatgcaccctactcttgctggtaaa
atcactggcatgttgttggagatagataattcagaattacttcatatgcttgagtctcca
gagtctctgcgttctaaggttgatgaagctgtagctgtactacaagcccaccaagctaaa
gaggctgcccagaaagcagtcaacagtgccactggtgttccaactgtttaa
DBGET
integrated database retrieval system
