Perognathus longimembris pacificus (Pacific pocket mouse): 125360903
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Entry
125360903 CDS
T08928
Symbol
Ubr5
Name
(RefSeq) E3 ubiquitin-protein ligase UBR5 isoform X1
KO
K10593
E3 ubiquitin-protein ligase EDD1 [EC:
2.3.2.26
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125360903 (Ubr5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
plop04121
]
125360903 (Ubr5)
Enzymes [BR:
plop01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
125360903 (Ubr5)
Ubiquitin system [BR:
plop04121
]
Ubiquitin ligases (E3)
HECT type E3
125360903 (Ubr5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
E3_UbLigase_EDD
MLLE
zf-UBR
Motif
Other DBs
NCBI-GeneID:
125360903
NCBI-ProteinID:
XP_048215022
LinkDB
All DBs
Position
12:27203224..27314453
Genome browser
AA seq
2798 aa
AA seq
DB search
MTSIHFVVHPLPGTEDQLNDRLREVSEKLNKYNLNSHPPLNVLEQATIKQCVVGPNHAAF
LLEDGRVCRIGFSVQPDRLELGKPDNNDGSKLNSNSGAGRTSRPGRTSDSPWFLSGSETL
GRLAGNTLGSRWSSGVGGSGGGSSGRSSAGARDSRRQTRVIRTGRDRGSGLLGSQPQPVI
PASVIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRDDEDGDDGDDTASE
SYLPGEDLMSLLDADIHSAHPSVIIDADAMFSEDISYFGYPSFRRSSLSRLGSSRVLLLP
LERDSELLRERESVLRLRERRWLDGASFDNERGSTSKEGEPNLDKKNTPVQSPVSLGEDL
QWWPDKDGTKFMCIGALYSELLAVSSKGELHQWKWSESEPYRNAQNPSLHHPRATFLGLT
NEKIVLLSANSIRATVATENNKVATWVDETLSSVASKLEHTAQTYSELQGERIVSLHCCA
LYTCAQLENNLYWWGVVPFSQRKKMLEKARAKNKKPKSSAGISSMPNITVGTQVCLRNNP
LYHAGAVAFSISAGIPKVGVLMESVWNMNDSCRFQLRSPESLKSMEKANKTTEAKPENKQ
EPVKTEMGPPPSPASTCSDASSIASSASMPYKRRRSTPAPKEEEKVNEEQWSLREVVFVE
DVKNVPVGKVLKVDGAYVAVKFPGTSSNTSCQSSSGPDADPSSLLQDCRLLRIDELQVVK
TGGTPKVPDCFQRTPKKLCIPEKTEILAVNVDSKGVHAVLKTGNWVRYCIFDLATGKAEQ
ENNFPTSSIAFLGQNERNVAIFTAGQESPIILRDGNGTIYPMAKDCMGGIRDPDWLDLPP
ISSLGMGVHSLVNLPANSTIKKKAAIIIMAVEKQTLMQHILRCDYEACRQYLMNLEQAVV
LEQNLQMLQTFISHRCDGNRNILHACVSVCFPTSNKETKEEEEAERSERNTFAERLSAVE
AIANAISVVSSNGPGNRAGSSSSRSLRLREMMRRSLRAAGLGRHEAGASSSDHQDPVSPP
IAPPSWVPDPPAMDPDGDIDFILAPAVGSLTTAATGSGQGPSTSTIPGPSTEPSVVESKD
RKANAHFILKLLCDSVVLQPYLRELLSAKDARGMTPFMSAVSGRAYPAAITILETAQKIA
KADVSSSEKEEDVFMGMVCPSGTNPDDSPLYVLCCNDTCSFTWTGAEHINQDIFECRTCG
LLESLCCCTECARVCHKGHDCKLKRTSPTAYCDCWEKCKCKTLIAGQKSARLDLLYRLLT
ATNLVTLPNSRGEHLLLFLVQTVARQTVEHCQYRPPRIREDRNRKTASPEDSDMPDHDLE
PPRFAQLALERVLQDWNALKSMIMFGSQENKDPLSASSRIGHLLPEEQVYLNQQSGTIRL
DCFTHCLIVKCTADILLLDTLLGTLVKELQNKYTPGRREEAIAVTMRFLRSVARVFVILS
VEMASSKKKNNFIPQPIGKCKRVFQALLPYAVEELCNVAESLIVPVRMGIARPTAPFTLA
STSIDAMQGSEELFSVEPLPPRPSSDQSSSSSQAQSSYIIRNPQQRRISQSQPVRGRDEE
QDDIVSADVEEVEVVEGVAGEEDHHDEQEEHGEENAEAEGQHDEHDEDGSDMELDLLAAA
ETESDSESNHSNQDNASGRRSVVTAATAGSEAGASSVPAFFSEDDSQSNDSSDSDSSSSQ
SDDIEQETFMLDEPLERTTNSSHASGAAQAPRSMQWAVRNTQHQRAASTAPSSTSTPTAS
SAGLIYIDPSNLRRSGTISTSAAAAAAALEASNASSYLTSASSLARAYSIVIRQISDLMG
LIPKYNHLVYSQIPAAVKLTYQDAVNLQNYVEEKLIPTWNWMVSIMDSTEAQLRYGSALA
SAGDPGHPNHPLHASQNSARRERMTAREEASLRTLEGRRRATLLSARQGMMSARGDFLNY
ALSLMRSHNDEHSDVLPVLDVCSLKHVAYVFQALIYWIKAMNQQTTLDTPQLERKRTREL
LELGIDNEDSEHENDDDTNQSATLNDKDDDSVPAETGQNHPFFRRSDSMTFLGCIPPNPF
EVPLAEAIPLADQPHLLQPNARKEDLFGRPSQGLYSSSASSGKCLMEVTMDRNCLEVLPT
KMSYAANLKNVMNMQNRQKKEGEEQNMLAEESESSKPGPSAHDLAAQLKSSLLAEIGLTE
SEGPPLTSFRPQCSFMGMVISHDMLLGRWRLSLELFGRVFMEDVGAEPGSILTELGGFEV
KESKFRREMEKLRNQQSRDLSLEVDRDRDLLIQQTMRQLNNHFGRRCATTPMAVHRVKVT
FKDEPGEGSGVARSFYTAIAQAFLSNEKLPNLDCIQNANKGTHTSLMQRLRNRGERDRER
EREREMRRSSGLRAGSRRDRDRDFRRQLSIDTRPFRPASEGNPSDDPDPLPAHRQALGER
LYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAHGRENGADS
ILDLGLLDSSEKVQENRKRHGSSRSVVDMDLDDTDDGDDNAPLFYQPGKRGFYTPRPGKN
TEARLNCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQ
LILASQSSDADAVFSAMDLAFAIDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEH
RMLVVAEQPLHAMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISFTSFNDESG
ENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPMPSITIRPPDDQH
LPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGFV
NT seq
8397 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccatccatttcgtggttcacccgctgccggggaccgaggaccagctcaatgac
aggttacgagaagtttcagagaaactgaacaaatataatttaaacagccatccccctttg
aatgtattggagcaggctactattaaacagtgcgtggtgggaccaaatcatgccgctttt
cttcttgaggatggtagagtttgcaggattggtttttcagtacagccagatagattggaa
ttgggtaaacctgataataatgatgggtcaaagttgaacagcaactcgggggcagggagg
acttcgaggcccggtaggacaagtgactccccatggtttctctcaggttctgagacactg
ggcaggctagcaggcaacaccttgggaagccgttggagttctggagttggtggaagtgga
ggaggatcctctggtaggtcatcagccggagcacgagactccaggcggcagactcgagtc
attcgaactggacgtgatagagggtctggacttttaggcagtcagccccagccagtgatt
ccagcatctgtcattccagaggagctgatctcacaggcccaagttgttctacaaggcaaa
tccagaagtgttattattagagaattacagcgaacaaatcttgatgtaaaccttgctgta
aataatttacttagccgggatgatgaagatggcgatgatggagatgatacagccagtgaa
tcttatttacctggagaggaccttatgtcccttcttgatgctgatattcattctgctcat
ccaagtgtcattattgatgcagatgccatgttttctgaggacattagctattttggttac
ccttcatttcgtcgttcatcactttccaggctaggctcatctcgagttctccttcttccc
ttagagagagactctgagctgttgcgtgaacgtgagtccgttttacgtttacgcgagcga
aggtggcttgatggagcctcatttgataatgagaggggctctaccagcaaggaaggagag
ccaaatttggataagaagaatacaccagttcaaagtccagtgtctttaggagaagattta
cagtggtggccggacaaggatggaacaaaattcatgtgtattggggctctgtattctgag
cttctggctgttagcagtaaaggagaactgcatcagtggaagtggagcgaatctgagcct
tacagaaatgcccagaatccttcattacatcatccaagagcaacatttttggggttaacc
aatgaaaagatagtcctcctgtctgcaaatagtataagagcaactgtagctacagaaaat
aacaaggttgctacctgggtggatgaaactttaagttctgtggcttcaaagttagagcac
actgcacagacttactcagaacttcaaggagaacggatagtttctttacattgctgtgct
ctttatacttgtgctcaactggagaacaatttatattggtggggggtagtcccttttagt
caaaggaagaaaatgttagagaaagctagagcaaaaaataaaaagcccaaatccagtgct
ggtatttcctccatgccaaacatcactgttggtacccaggtttgtttaagaaataatcct
ctttatcatgctggagcagttgcattttcaattagtgctgggattccaaaagttggcgtc
ttaatggagtcagtttggaatatgaatgacagctgtagatttcaacttagatctcctgag
agcctaaaaagcatggaaaaagctaacaaaactactgaagctaagcctgaaaataaacag
gaaccagtcaaaacagaaatgggccctccaccatctccagcatctacatgcagtgatgcc
tcctctattgcaagcagtgcatcaatgccatacaaacgacgtcggtcaacccctgctcca
aaagaagaggaaaaagtgaatgaagagcagtggtctcttcgggaagtcgtttttgtggaa
gatgttaagaatgttcctgttggcaaggtgctaaaagtggatggtgcctatgttgctgta
aaatttccaggaacatccagtaatacaagctgtcaaagcagctctggtccagatgctgac
ccttcttctctccttcaggattgtcggttacttaggattgatgaacttcaggttgtcaaa
actggtggaactcccaaagtgcccgactgttttcagaggacccctaaaaagctttgtata
cctgaaaaaacagaaatattagcagtgaatgtagactccaaaggtgtacatgctgttttg
aagactggaaactgggtacggtactgtatctttgatcttgctacaggaaaagctgaacaa
gaaaataatttccctacaagcagcattgcctttcttggccagaatgagaggaatgtagcc
atattcactgctggacaggaatctcccattattcttcgtgatggaaatggtactatctat
ccaatggccaaagattgcatgggaggaataagagatcctgattggcttgatcttccacct
attagtagtcttggaatgggtgtgcattctttagtaaatcttcctgctaattcaacaatc
aaaaagaaagctgctattatcatcatggctgtagagaaacaaactttaatgcaacacatt
ctacgctgtgattatgaggcttgtcggcagtatctcatgaatctggagcaagcagttgtt
ttagagcagaatttacagatgctacagactttcattagtcacagatgtgatggaaatcgg
aatatattacatgcttgtgtttcagtttgctttccaaccagtaataaggaaactaaagaa
gaagaggaagcagaacgctctgaaagaaatacatttgcagaaaggctttctgctgtagag
gccattgcaaatgcaatatcagttgtttccagtaatggcccaggtaatcgggctggatct
tcaagtagtcgaagtttgagattgcgagaaatgatgaggcgttcattgcgagcagctggt
ttgggtagacatgaggctggagcttcatccagtgaccaccaggatcctgtttcacccccc
atagctccccctagttgggttcctgaccctcctgcaatggatcctgatggtgacattgat
tttatcctggcccccgctgtgggatctcttaccacagcagcaactggcagtggtcaagga
ccaagcacctctaccattccaggtccttccacagagccttctgtagtggaatccaaggat
cgaaaggcaaatgcacattttatattaaaattgttatgtgacagtgtggttctgcagccc
tacttacgagaactcctttctgccaaggatgcaagaggaatgactccatttatgtcagct
gtaagtggccgagcttaccctgctgctattactatcttagaaacagcccagaaaattgca
aaagctgatgtatcctcaagtgaaaaagaagaagatgtatttatgggaatggtttgccca
tctggtaccaatcctgatgactctcctctatatgtcttatgttgtaatgacacctgcagc
tttacatggactggagcagagcatataaaccaagatatttttgaatgtcgaacttgtggt
ttgctggagtcactttgttgttgtacagaatgtgcaagagtttgtcataaaggtcatgat
tgcaaactcaagcgaacatcaccaactgcctattgtgattgttgggagaagtgtaagtgt
aaaactctaatagctggacagaaatctgctcgccttgatctactttatcgtctgctcact
gctactaatctggtcactctgccaaacagtaggggagagcacctgctgctgtttctggtg
cagaccgtggccaggcagacagtagagcattgccagtacaggccgcctcgaatcagggag
gatcggaatcgaaaaacagctagccctgaagattcagatatgcccgatcatgacttagag
cctccaaggtttgcccagcttgctttagagcgtgttctacaggactggaatgccttgaaa
tctatgattatgtttgggtcacaggagaacaaagaccctttgagtgccagcagtaggata
ggacatcttttgcctgaagagcaagtatacctcaatcagcaaagtggtacgattaggctg
gactgtttcactcattgccttatagtcaaatgcacagcagatattttgcttttagatact
ctactcggtacattagtgaaagaactccaaaacaaatacacacctggacgccgagaagaa
gctattgctgtgacaatgaggtttctacgttctgtagcaagagtgtttgtcattcttagt
gtagaaatggcttcatccaaaaagaaaaacaactttattccacagcccattggaaaatgt
aagcgtgttttccaagcactgctgccttacgctgtagaagaattgtgtaatgtagctgag
tcattgattgttcctgtcagaatggggattgcccgcccgaccgcaccatttactttggcc
agtactagcatagatgccatgcaaggcagtgaagaactattttcagtagaaccactacct
ccaagaccatcatcagatcagtctagcagctccagtcaggctcagtcatcctatatcatc
cgcaatcctcagcagagacgcattagccagtcacagcctgttagaggtagagatgaagaa
caggatgatattgtttcagcagatgtggaagaggtggaggtggtggagggtgtggctgga
gaggaggatcatcatgatgagcaggaagagcatggagaagagaatgctgaggctgaggga
cagcacgatgagcacgatgaagatgggagtgacatggagctggatttgttagctgctgct
gaaacagaaagtgacagtgaaagtaaccatagcaaccaagataatgctagtgggcgcaga
agtgttgtcactgcagcaactgctggctctgaagcaggagcaagcagtgttcctgccttt
ttttctgaagatgattctcagtcaaatgactcaagtgattctgatagcagcagtagtcag
agtgacgacatagaacaggagacctttatgcttgatgagcccttagaaagaaccaccaat
agctcccatgccagtggtgctgcccaagctcctcgttccatgcagtgggctgttcgcaac
acacagcatcagcgagctgccagcacagctccttccagcacatcgacaccaacagctagt
tccgcgggtttgatttatattgatccttcaaatttacgccggagtggtaccatcagtaca
agtgctgcagctgcagcagctgctttggaagctagcaatgccagcagctacttaacatct
gccagcagtttagccagggcttacagcattgtcatcagacaaatctcggacttgatgggc
ctcattcctaagtataatcacctagtgtactctcagattccagcagctgtgaaattgact
tatcaagatgcagtaaacttacagaactatgtagaagaaaagcttattcccacgtggaac
tggatggtcagtattatggattctactgaagctcaattacgttatggttctgcattagca
tctgctggtgacccggggcatccaaaccatcctcttcatgcttctcagaattcagcccga
agagagagaatgactgcacgggaagaggctagcttacgaacccttgaaggaagacgacgt
gccacattgcttagtgcccgtcaaggaatgatgtctgctcgaggagactttcttaattat
gctctttctttaatgaggtctcataatgacgagcattctgatgttctcccagttttggat
gtttgctcattgaagcatgtggcatatgttttccaagctcttatatattggattaaagca
atgaatcagcaaacaacattggatactcctcagctggaacggaaaaggacacgagaactt
ttggaactgggtattgataatgaagattcagaacatgaaaacgatgatgacaccaatcaa
agtgctactttgaatgataaggacgatgactctgttcctgcagaaactggccagaaccat
ccctttttccgacggtctgactctatgaccttccttgggtgtattcccccaaatccattt
gaagtgcctctggctgaagccatccccttggctgatcagcctcatctgctgcagccaaat
gctagaaaggaggatctttttggccgtccaagtcagggtctttattcttcatctgccagt
agtgggaagtgcttaatggaggttacaatggacagaaattgccttgaggttcttccaact
aaaatgtcttatgctgccaatctgaaaaatgtaatgaacatgcaaaatcggcaaaaaaaa
gaaggggaagaacagaatatgctggcagaagaatctgagagttcaaaaccaggcccatca
gctcatgatcttgctgcacaactgaaaagtagtttgctggcagaaataggtcttactgaa
agtgaaggaccccctcttacatctttcagaccacagtgtagtttcatgggaatggttatt
tcccacgatatgctgctagggcgttggcgtctttctttggaactgtttggtagagtattc
atggaggatgttggagcagaacctggatcaatcttaactgaattgggtggttttgaggta
aaagaatcaaaattccgtagagaaatggaaaagctgagaaaccagcaatcaagagactta
tcactagaggttgatcgagatcgagatcttctcattcagcagactatgaggcaacttaat
aatcattttggtcgaagatgtgccactacaccaatggctgtccacagagtaaaagtcaca
tttaaggatgaaccaggagagggcagtggtgtagcacgaagtttttatacagccattgca
caagcatttttgtcaaatgaaaaattgccaaatctagattgtatccaaaatgccaacaaa
ggtacccacacaagtttaatgcaaagattaaggaacagaggagagagagatcgagaacgg
gaaagagaaagggaaatgaggaggagtagtggcttgcgagcaggttctcgaagagaccgg
gatagagacttcagaagacagctttccattgacacccggcccttcagacctgcctctgaa
gggaatcccagcgatgatcctgatcctctgcctgcacatcggcaggcacttggagagagg
ctttatccccgtgtgcaagcaatgcagcctgcatttgcaagtaaaatcactggcatgttg
ttggaattatccccagctcagctgctgctccttctagcaagtgaagattctctgagagca
agagtagacgaggccatggaactcatcattgcccatggacgggaaaatggtgctgatagt
atcttggatcttggattattagattcctcagaaaaggtacaggaaaacagaaaacgtcat
ggctctagtcgaagtgtagtagatatggatttagatgatacagatgatggagatgacaat
gcccctttgttttaccaacctggaaaaagaggattttatactccaaggcctggcaaaaac
acagaagcaaggttgaactgttttagaaatattggcaggattcttggactgtgtctgcta
caaaatgaactttgtcctattacattaaatagacatgtaattaaagtgttgcttggaaga
aaagtcaactggcatgattttgctttttttgaccccgtaatgtatgagagtttacggcaa
ctaatccttgcttctcagagttcagatgccgatgctgttttctcagccatggatttggca
tttgcaattgacctgtgtaaagaagagggtggcggacaggttgaactcattcctaatggt
gtgaatatcccagtcacacctcagaatgtgtacgagtatgtgagaaagtatgcagagcac
aggatgttggtagtagcagaacagccattgcatgcaatgaggaaaggtctactggatgtg
cttccgaaaaattcactagaagacttaacagcagaagattttaggcttttggtaaatggc
tgtggtgaagttaatgtacaaatgctgatcagctttacttctttcaatgatgaatcagga
gaaaatgctgaaaagctcttacagttcaaacgttggttttggtctatagtagagaagatg
agcatgacagaacggcaagatcttgtttacttttggacatcaagcccttcattaccagcc
agtgaagaaggatttcagcctatgccctcaatcacaataagaccgccagatgaccaacat
cttcctactgcaaatacttgtatttctcgcctttatgtcccactctactcctctaaacag
attctcaaacagaaattgctactcgccattaagaccaagaattttggttttgtgtag
DBGET
integrated database retrieval system
