Perognathus longimembris pacificus (Pacific pocket mouse): 125360929
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Entry
125360929 CDS
T08928
Symbol
Sox17
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
125360929 (Sox17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plop03000
]
125360929 (Sox17)
Transcription factors [BR:
plop03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
125360929 (Sox17)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
125360929
NCBI-ProteinID:
XP_048215053
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Position
12:56290954..56294041
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AA seq
408 aa
AA seq
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MSSPDAGYASDDQSQARSALPPVMAGLGPCPWAESLSPLGDVKVKGGEAAASSGAPSGAS
GRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVE
EAERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFLHGLAEPQAAALGPDGGRVAMEGL
GLPFPEQGFPAGPPMLAPHVGGHYRDCQGLGAPPLDGYPLPTPDTSPLDGVDPDPAFFAA
PMPGDCPAPATYSYPQVSDYAMPAEPPAGHMHPRLGPEPAGPSMPGLLAPPGALHMYYGA
MGSAAAGGGRGFHAQPAQSPAAGPGQPSPPPEALPGRDGTDPSHPAELLGEVDRTEFEQY
LHFVCKPEMGLPYQGHDCGVSLPDSHGAISSVVSDASSAVYYCNYPDV
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcccggatgcggggtacgccagtgacgaccagagccaagcccggagcgcgctg
cccccggtgatggcggggctgggcccttgcccctgggccgagtctctgagccccctcggg
gatgtgaaggtgaagggcggagaggcggcggccagtagcggggcgccgtctggggcctcg
ggacgggccaagggcgagtcccgcatccggcggccgatgaacgccttcatggtgtgggct
aaggacgagcgcaagcggctggcacagcagaacccggacctgcacaatgcggagctgagc
aagatgctaggcaagtcgtggaaggcgctgacgctggcggagaagcggccgttcgtggag
gaggccgagcggctgcgcgtgcagcacatgcaggaccaccccaactacaagtaccgaccc
cggcggcgcaagcaggtgaaacggctgaagcgggtggagggaggcttcctgcacggcctc
gccgagccgcaggccgcggcgctgggccccgacggcggccgcgtggcgatggaaggcttg
ggcctgcccttcccggagcagggcttccccgcgggcccgccgatgctggccccgcacgtg
ggtggccactaccgcgactgccagggcctgggcgcgcccccgctggacggctacccgctg
cccacgccggacacgtcgcccctggacggcgtggaccccgacccagccttcttcgccgcc
ccgatgcccggagactgcccagcgcctgccacctacagctacccgcaggtctcggactac
gccatgcccgcggagccgcccgccggccacatgcacccgcgactgggccccgagcccgcg
ggcccctcgatgccgggcctcctggcgccccctggcgccctgcacatgtactacggcgcg
atgggctcggcggcggcgggcggcggacgcggcttccacgcgcagcccgcgcagagcccc
gcggccggcccggggcagccgtccccgcctcccgaggcgctgccaggccgcgacggcacg
gaccccagccaccccgccgagctcctcggggaggtggatcgcacggaattcgaacagtat
ctgcacttcgtgtgcaagcccgagatgggtctcccctaccaggggcatgactgtggggtg
agcctccccgacagccacggggccatctcctccgtggtgtccgacgccagctccgccgtg
tactactgcaactaccccgacgtttga
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