Perognathus longimembris pacificus (Pacific pocket mouse): 125361050
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Entry
125361050 CDS
T08928
Symbol
Rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04140
Autophagy - animal
plop04211
Longevity regulating pathway
plop05010
Alzheimer disease
plop05014
Amyotrophic lateral sclerosis
plop05016
Huntington disease
plop05017
Spinocerebellar ataxia
plop05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125361050 (Rb1cc1)
09150 Organismal Systems
09149 Aging
04211 Longevity regulating pathway
125361050 (Rb1cc1)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
125361050 (Rb1cc1)
05014 Amyotrophic lateral sclerosis
125361050 (Rb1cc1)
05016 Huntington disease
125361050 (Rb1cc1)
05017 Spinocerebellar ataxia
125361050 (Rb1cc1)
05022 Pathways of neurodegeneration - multiple diseases
125361050 (Rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
plop01009
]
125361050 (Rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125361050 (Rb1cc1)
03029 Mitochondrial biogenesis [BR:
plop03029
]
125361050 (Rb1cc1)
Protein phosphatases and associated proteins [BR:
plop01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125361050 (Rb1cc1)
Membrane trafficking [BR:
plop04131
]
Autophagy
Autophagosome formation proteins
ULK complex
125361050 (Rb1cc1)
Mitochondrial biogenesis [BR:
plop03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
125361050 (Rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
Lant_leader_dom
PFTS_polysacc
Jag_N
Motif
Other DBs
NCBI-GeneID:
125361050
NCBI-ProteinID:
XP_048215226
LinkDB
All DBs
Position
12:complement(54867689..54950751)
Genome browser
AA seq
1593 aa
AA seq
DB search
MKLYVFLVNTGTTLTFDTELTVQTVADLKYAIQSKYKIAIQHQVLVVNGGECMAADRRVC
TYSAGTDTNPIFLFNKEMILCERAPAIPKTTFSTENDMEIKVEESLMMPAVFHTVASRTQ
LAVEMYEVAKKLCSFCEGLVHDEHLQHQGWAAIMANLEDCSNSYQKLLFKFESIYSDYLQ
SIEDIKLKLTHLGTAVSVMAKIPLLECLTRHSYRECLGRLDSLNEHEGSEKAEMKRSSEL
VLSPDMPRTTNTSLLTSFHKSVEHVASDATDTESGKEIKESCQSTIQQDEPSVAAKDSDL
PFFNVSLLDWINVQDRPNDVESLVRKCFDSMSRLDPKIIQPFIKECRQTIVKLDNQNMKA
IKGLEDRLYALDQMIASCGRLVNEQKELAQGFLANQMRAENLKDASVLPDLCLSHANQLM
IMLQNHRKLLDIKQKCTTAKQELANNLHVRLKWCCFVMLHADQDGEKLQALLRLVIELLE
RVKIVEALSTVPQMYCLAVVEVVRRKMFIKHYREWAGALVKDGKQLYEAEKSKRESFGKL
FRKSFLRNRLFRGLDSWPPSFCTQKPRKFDCELPDISLKDLQFLQSFCPSEVQPFLRIPL
LCDFEPLHQHVLALHNLVKAAQSLDEMSQTITDLLNEQKVSVSQSSPQSASSPRIESATG
ITTTTSPRTPPPLTVQDPLCPAVCPLEELSPDSIDAHTFDFETIPHPNIEQTIHQVSLDL
DSLAESPESDFMSAVNEFVIEENLSSPNPISDPQSPEMMVESLYSSVINAIDSRRMQDTN
TCGTEDFGGRASLNVRLEKCRVVAQESHFSIQTIKEDLCHFRTFVQKEQCDFSNSLKCTA
LEIKNIIDKVKCSLEITLKEKHQKELQTLKSEYEGKLDALVKESEENEKKIKKLKGDLVC
LEEVLQNKDNEFALIKHEKEAVICMQNEKDQKLLEMENIMHTQDCEIQELKQSREIVLED
LKKLHVESDEKIELLRAELQCLEQSHLKELEDTLHVRHTQEFEKVRTDHQVSLEKLKQEN
QQRIDQIQEFHATTVQEKEQQLQELKLKVSDLSDMRCKLEVELALKEAETDEIKILLEES
KTQQKETLKSLLEQETETLRTEINKLNQKIQDNNENYQVGLAELRALMTIEKDQCISELI
SRHEEESNLLKTELDKVTSLHNQAFEIEKNLKEQIVELQIKLNSELNVLEKQKDEQITQQ
EEKYEAIIQNLEKDKETLLINHEQDKEQLIQKLNCEKDEAIQSALREFKLEREVVEKELL
EKIKHLENQIAKSHTIESTREDASGLVAELQEKLQEEKAKFLEQLEEQEKRKNEEMQNVR
TSLIAEQQTNFNTVLTREKMRKENIINDLSDKLKSTMQQQERDKDLIESLSEDRARLLEE
KKKLEEEVSKLRSSSFIPLPHITAAPELYGACAPEFPGETERQAMDTAEEGRVDSTMETS
MMSVQENIHMLSEEKQRIMLLERTLQLKEEENKRLNQRLMSQSMSSVSSRHSEKIAIRDF
QVGDLVLIILDERHDNYVLFTVSPTLYFLHSESLPALDLKPGEGASGTSRRPWVLGKVME
KEYCQAKKAQNRFKVPLGTKFYRVKAVSWNKKV
NT seq
4782 nt
NT seq
+upstream
nt +downstream
nt
atgaagttatatgtatttctggtcaacactggaacaactctgacatttgatactgaactt
acagtgcagactgtggcagaccttaagtatgctattcaaagcaaatacaagattgctatt
cagcaccaggtgctggtggtcaacggaggagagtgcatggctgcagatagaagagtgtgt
acctacagcgctgggacggacacaaatccaatttttctttttaacaaagaaatgatctta
tgtgaacgtgcacctgctattcctaaaactaccttttcaacagaaaatgacatggaaata
aaagttgaagaatctcttatgatgcctgcagtttttcacactgttgcttcgagaacacag
cttgcagtggaaatgtatgaagttgccaagaaactctgttctttctgtgaaggtcttgtc
catgatgaacatcttcaacaccaaggctgggctgcaatcatggccaatctggaagactgc
tcaaattcataccagaagctacttttcaagtttgaaagtatttattcagattatctgcaa
tccatagaagacatcaagttaaaacttactcatttaggaactgctgtttcagtaatggcc
aagattccactgttggagtgtctgaccagacatagttacagggaatgtttgggaagactg
gattctttaaatgaacatgaaggctcagaaaaggctgagatgaaaagatcttctgaactg
gtgctctctcctgatatgcctagaacaactaacacatcgttgttaacctcatttcacaag
tcagtggaacatgtagcttcagatgccacagatactgaaagtggcaaagaaattaaggaa
tcgtgtcaaagtacgatccaacaagatgaaccttcagtagctgctaaagacagtgatctg
cccttttttaatgtttctttgttagattggataaatgttcaagatagacctaatgatgta
gaatctttggtcaggaaatgctttgattctatgagcaggcttgacccaaagattattcag
ccttttataaaggaatgccgtcaaaccattgtcaaacttgataatcagaatatgaaagct
attaaagggcttgaagatcgactgtatgctctggaccagatgattgctagctgtggccgg
ctggtgaatgaacagaaagagctcgctcagggatttttagctaaccagatgagagctgaa
aatttgaaggatgcatctgtattacctgatttgtgcctgagtcatgcaaatcagttgatg
attatgttgcagaatcatagaaaattgttggatattaaacagaagtgtaccactgccaaa
caagaactagcaaataatttacatgtcagactaaagtggtgttgctttgtgatgcttcat
gctgatcaggatggagagaaattgcaagcattgctccgtcttgtaatagaactgttagaa
agagtcaaaattgttgaagctcttagtacagttcctcaaatgtattgcctagctgttgtt
gaagttgtaaggagaaaaatgttcattaaacactacagagagtgggctggtgctctagtc
aaagatggaaagcagttgtatgaggctgaaaagtccaaaagggaatcctttgggaaatta
tttaggaagtcttttttaagaaaccgtctgtttaggggactggactcctggcccccttcc
ttttgtactcagaagcctagaaagtttgactgtgaacttccagatatttcattaaaagat
ttacagtttctgcagtcattttgtccttcagaagttcagccattcctcaggatcccttta
ctttgtgactttgaacctcttcaccagcatgtacttgccctacacaatttggtaaaagcc
gcacaaagtttggacgaaatgtcacagaccattacagatctgctgaatgaacaaaaggta
tctgtcagtcagtcgtccccacaatcagcctcttccccaaggatagaaagtgcaacagga
attacaactactacctcaccaagaactcctcctccactcactgttcaggatcccttatgt
cctgcagtatgccccttagaagaattatctccagatagcattgatgcacatacatttgat
tttgaaactattccccatccaaacatagaacaaactattcaccaagtttctttagacttg
gattcgttagcagagagtcctgagtcagattttatgtctgctgtgaacgagtttgtgata
gaagaaaatttatcatctcctaatcctataagtgatccacaaagtccagaaatgatggtg
gaatcactttattcatcagtcatcaatgcaatcgatagtagacgaatgcaggatacaaat
acttgtggtacagaggattttggaggtcgtgcttctctgaatgtccgattggaaaaatgt
agagttgttgcccaagaatctcacttcagtatacagactatcaaggaagacctttgccac
ttcagaacatttgtacaaaaagagcagtgtgacttctcaaattctttaaaatgtacagca
ctagaaataaaaaacattattgacaaagtaaaatgctccttggaaataacactaaaagaa
aagcatcaaaaggaactacagactctaaaaagtgaatatgaagggaaacttgatgcacta
gtaaaggagagtgaagaaaatgaaaagaaaattaaaaaactgaaaggagacttagtatgc
cttgaggaagtgttacaaaataaagataatgaatttgccctgattaagcatgaaaaggaa
gctgtcatttgtatgcagaatgagaaagatcagaaactgttggagatggaaaatattatg
cacactcaggattgtgaaattcaagaactgaaacagtcacgagagatagtgttagaagac
ttgaaaaaactccatgttgaaagtgatgagaaaatagaattattgagggcagaacttcag
tgcttagagcaaagccacctaaaggaattggaggacacactgcatgtcaggcatacacaa
gagtttgagaaagttaggacagaccaccaagtttccttggagaaattgaaacaggaaaat
caacaaagaattgatcaaatacaagagtttcatgccacaactgttcaggaaaaagaacaa
cagctgcaggaattgaaactcaaggtttctgatttgtcagacatgagatgcaagttagag
gttgaacttgcattgaaggaagcagaaactgatgaaataaaaattttgctggaagaaagc
aaaacacagcagaaagagactttgaaatcccttcttgaacaagagaccgagactttgaga
acagaaataaataaactaaaccaaaaaattcaagataataatgaaaattatcaggtgggt
ctagctgagctaagagctttaatgacaattgaaaaagatcaatgcatttcagagttaatt
agtcggcacgaagaagaatctaatctacttaaaactgaattagacaaagtaacatctttg
cataaccaagcatttgaaatagaaaagaacttaaaagaacaaatagttgaattgcagatt
aaattgaactccgaattgaatgttcttgaaaaacaaaaggatgaacaaatcacccaacaa
gaagagaaatatgaagctattatacagaaccttgagaaagacaaagagacattgctcata
aaccatgaacaagacaaagaacagttaatccagaagcttaattgtgaaaaagatgaagct
attcagtctgcactgagagaatttaaattggagagagaagttgtggaaaaagaattatta
gaaaaaataaaacatcttgagaatcaaatagcaaaaagtcataccattgaatctaccaga
gaagatgcttcaggtttagttgctgaacttcaagaaaaacttcaagaagaaaaagctaag
tttctagaacaacttgaagagcaagaaaaaagaaagaatgaagaaatgcaaaatgttcga
acatcgttgattgctgagcaacagaccaatttcaacactgttttgacaagagagaaaatg
aggaaagaaaacataatcaatgatcttagtgataaattaaaaagtacaatgcaacaacaa
gagagagataaagatctgatagaatctctttctgaagatagagctcggttgcttgaggag
aagaagaagcttgaagaagaagtcagtaagttgcgtagtagcagttttattcctcttcca
catataactgctgccccagagctttatggagcttgtgctcctgaattcccgggtgagaca
gaaagacaagccatggacacagcagaggaaggaagagtggattcaacaatggagacaagc
atgatgtctgtgcaagaaaatatccatatgctgtctgaagaaaagcagagaataatgctc
ttagaacgaacactacagttaaaagaagaagaaaataaacggttaaaccaaaggctgatg
tctcagagcatgtcttcagtatcttcaaggcattcggaaaagatagctattagagatttt
caggtgggagatttggtgctcattatcctagacgagcgccatgacaattatgtgttgttt
actgttagccctactttgtattttctgcattcagaatctctgcctgctcttgatctcaaa
ccaggtgagggagcttcaggtacatctagaagaccctgggtacttggaaaagtaatggaa
aaggaatactgtcaagctaaaaaggcacaaaacagatttaaagttcctttagggacaaag
ttttacagagtgaaagctgtgtcatggaataagaaagtatag
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integrated database retrieval system
