Perognathus longimembris pacificus (Pacific pocket mouse): 125361198
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Entry
125361198 CDS
T08928
Symbol
Dchs1
Name
(RefSeq) protocadherin-16
KO
K16507
protocadherin-16/23
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04392
Hippo signaling pathway - multiple species
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04392 Hippo signaling pathway - multiple species
125361198 (Dchs1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
plop04515
]
125361198 (Dchs1)
Cell adhesion molecules [BR:
plop04515
]
Cadherins
Cadherin related
125361198 (Dchs1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
125361198
NCBI-ProteinID:
XP_048215398
LinkDB
All DBs
Position
13:complement(14703575..14738278)
Genome browser
AA seq
3292 aa
AA seq
DB search
MQKELGIGPSSPGMKSSRSLLLLPLLVLLGAGLPGAWGQAGSLDLQIDEEQPAGTLIGDI
SAGLPAGMAAPPMYFISAQEGSGVGTDLAIDEHSGVVRTARVLDRERRDRYRFTAVTPDG
ATVEVTVRVADINDHAPAFPQARAALQIPEHTALGTRYPLEPARDADAGRLGTQGYSLSG
DGAGETFRLETRPGPDGAPVPELVVTGELDRENRSHYMLQLEAYDGGSPPRRAQALLDVT
LLDINDHAPSFNQSRYHAVVSESLAPGSPVLQVFASDADAGANGAVTYEINRRQSEGDGP
FSIDAHTGLLRLERPLDFEQRRVHELVVQARDGGAHPELGSAFVTVHVRDANDNQPSMTV
IFLSADGSPRVSEAAPPGQLVARISVSDPDDGDFAHVNVSLEGGEGHFALSTQDSVIYLV
CVARRLDREERDAYNLRVTATDSGSPPLRAEAAFVLHVTDVNDNAPAFDRQLYRPEALPE
VALPGSFVVRVTARDPDQGSNGQVTYSLAPGTHTHWFSVDPTSGIITTAASLDYELEPQP
QLIVVATDGGLPPLASSATVSVALQDVNDNEPQFQRTFYNASLPEGTQPGTCFLQVTATD
ADSGPFGLLSYSLGAGLGASGSPPFRIDAHSGDVCTTRILDRDQGPSSFDFTVTAVDGGG
LKSMVYVKVFVSDENDNPPQFYPREYAASLSVQSSPGTAVLRVRAHDPDQGPHGRLSYHI
LAGNSPPLFALDEHSGLLTVAWPLTRRANSVVQLEIGAQDGGGLKAEPSARVNISIVPGT
PTPPIFDQLQYVFSVPEDVAPGTSVGIVQARNPPGRSGPVTLALSAGDPRGLFSLDMTSG
LLKTLRPLDRELLGPVLELEVRAGSGVPPAYAIARVRVMLDDVNDNSPAFPAPEDTVLLP
PNTAPGTPIYTLRAVDPDSGVNSRITFTLLAGGDGAFTVDPTTGHVRLTGPLGPPGRPDH
ELELEARDGGSPPRTSHFRLRVVVQDLENHGLAPRFDSPSYRVDLPSGTTPGAQVLQVQA
QAPDGSPVTYHLAADGARSPFDLESQSGWLWLRAALDRESQELYTLKVMAVSGSKAELGQ
QTATATVRVNILNQNDHSPRLSEDPTFLAVAENQPPGTSVGRVFATDRDSGPNGRLTYSL
QPLSEDNKAFRIHPQTGEVTTLQTLDREQQSSYQLPVLVQDAGSPPRSTTGTVHIAVLDL
NDNSPTFLQASGAAGGGLPVQVPDRVPPGTPVTTLQAKDPDEGENGTILYMLTGPGSELF
SLHPHSGELLTAASLIRAERPHYVLTLSAQDQGSPPRSASLQLLVQVLPSARVAEPPPDL
AEPDPAAPVPVVLTVTAVEGLQPGSLLGSVAPPEPPGVGALTYTLVGGADPEGTFALDAT
SGRLYLARPLDFEAGPAWRALTVRAEGPGGAGARLLRVQVRVQDENEHAPAFARDPLALA
LPENPEPGAALYTFRASDADGPGPNSEVRYRLLRQEPPVPALRLDARTGALSAPRGLDRE
TTPALLLLVEATDRPTNASRRRAARVSARVFVTDENDNAPVFASPSRVRLPEDQPPGPTT
LHVVARDPDLGEAARVSYRLAAGGDGHFRLHASTGALSVVRPLDREQRAEHILTIVASDH
GSPPRSSTQLLTVSIIDVNDEAPTFQQQEYSVILRENSPPGTSLLTLQATDPDLGANGQV
TYGGVSGESFSLDPNTGVLTTLRALDREEQEEINLTVYARDRGSPPLLTHVTVRVTVEDE
NDHAPTFGNAHLSLEVPEGQDPQTLTTLRASDPDIGANGKLEYHILDGDPSGAFALDVAS
GEFGTVRPLDREVEPSFQLRIEAWDGGQPARSATLLVTVTVLDANDHAPAFPVPAYSVEV
PEDAPAGTLLLQLQAHDPDAGANGRVTYYLGSGTAGSFLLEPSSGELRTATALDREHLPS
YTFSVSAVDSAAAGPLSSTVPITVTVRDVNDHAPTFPTSPLRLRLPRPGPSLSTPTLALA
TLRAEDRDAGANASILYRLAGTPPPGTTVDSYTGEIRVTRSPAALGPRDRVLFIVATDLG
RPARSATGVVIVGLQGEPERGPRFPRASSEAVLRENAPPGTSVVSPKAVHTGGSSGPIIY
SILSGNEKGIFSIQPSTGAITVRAAEGLDFETSPRLRLVLQAESGGAFAFSVLTLTLQDA
NDNAPRFLRPHYVAFLPESRPLEGPLLQVEADDLDQGSGGQISYSLAASQPARGLFHVDP
ATGTITTTAILDREIWAETRLVLMATDRGSPALVGSATLTVMVIDTNDNRPTIPQPWELR
VSEDALLGSEIAQVTGNDVDSGPVLWYVLSPSGPQDPFTIGRYGGRVSLMGPLDFEQCDH
YDLQLLARDGPHEGHANLTVLVEDVNDNTPTFAHSLYQVMLLEHTPPGSAILSVSATDRD
SGANGHISYHLASPVEGFSVDPNNGTLFTTMGTEALGHEGPGVLDVVLEARDHGAPRRVA
RATVHVQLQDQNDHAPSFTLPHYRVAVTEDLPPGSTLLTLEATDADASRTHATVDYSIIS
GNKGRVFQLEPRLAEAGEGVGPGPQALGCLVLLEPLDFETLTQYNLTVAAADRGQPPRSS
AVSVTVSVLDVNDNPPVFTRASYRVTVPEDMPVGAELLHVEASDADPGPHGLVHFTLSSG
DPLGLFELDESSGALRLAHSLDCETQSRHQLVVQATDPAGAHFALAPVTIEVEDVNDHGP
AFPLNLLSTSLAENQPPGTLVTTLHAIDGDSGAFGKLRYSLLEAGPEGREAFALNSSSGE
LRARVPFDYEHTGSFRLLVGAADAGNLSASVTVSVLVTGEDEYDPVFLAPAFHFQVPEGA
QRGHSLGHVQATDEDGGADGLVLYSLASSSPYFAINQTTGALYLRVDSRAPGSGTATSGG
GGRTRRETPRELRLEVVARGPLPGSRSATVPVTVDITHTALGLAPDLNLLLVGAVAASLG
VVVVLALAALVLGLVRARNRKAESAPGPMSQAAPLASGSLQKLGREPPSPPPSEHLYHQT
LPSYGGPGAGGPYPRGGSLDPSHSSGRGSAEAAEDDEIRMINEFPRVASVASSLAARGPD
SGIQQDADGLSDTSCEPPAPDTWYKGRKAGLLLPGAGATLYREEGTPATATAFLGGCGLS
PAPSGDYGFPADGKPCVAGALTAIVAGEEELRGSYNWDYLLSWCPQFQPLASVFTEIARL
KDEARPCPPAPRIDPPPLITAVAHPGAKSVPPKPASTAIARAIFPPASHRSPISHEGSLS
SAAMSPSFSPSLSPLAARSPVVSPFGVAQGPSASALSTESGLEPPEDTELHI
NT seq
9879 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaggagctgggcatcgggccctccagccctggcatgaagagctccaggtccctt
ctcctgctgcccctgctggtgctgctaggggctgggttgccaggagcctggggtcaggcg
ggaagcctggacctgcagattgatgaggagcagccagcaggcacactgattggggacatc
agtgcagggcttccagcgggcatggcagctcctcctatgtacttcatctctgcccaggag
ggcagcggtgtgggcacagacctggccatcgatgaacacagtggggttgtccgtacggcc
cgtgtattagaccgtgagcggcgggaccgctaccgcttcacagcagtcactccagatggg
gccaccgtggaagtcacagttcgagtggctgacatcaatgaccacgcccccgccttcccg
caggctcgagctgccctgcagatacctgaacacacagctcttggcacccgctacccactg
gagcctgctcgtgatgccgacgctggccgcctaggaacccagggctattcgctgtctggt
gacggggctggagagaccttccggctggagacccgtcctggtcctgatggggctccagta
cctgagctagtagttactggggagctggaccgggagaaccgctcacactacatgttacag
ctggaggcctacgatggtggctctcctccccggagggcccaagccctgctggacgtgaca
ctcctggacatcaatgaccatgccccatcttttaaccagagccgttaccacgctgtagtg
tcagagagcctggcccctggaagtcctgtcctgcaggtgttcgcatctgatgcggatgcc
ggtgccaatggggctgtgacttatgagatcaaccgaaggcagagcgagggtgatgggcct
ttctccattgatgcacacacggggttactgcgactagagaggcccctggactttgagcaa
cggcgggtccatgagttggtggtgcaggcacgggatgggggagctcacccagagctgggc
tcggcctttgtgactgtgcatgtgcgagatgccaatgacaatcaaccctccatgaccgtc
atcttcctgagtgcagatggctctccccgcgtgtctgaggccgctccacccggacagctt
gttgcgcgcatctcggtgtcagacccagatgacggtgactttgctcatgtcaatgtgtcc
ttggagggtggcgaaggccactttgcccttagcacgcaagacagcgtcatctacctggtg
tgtgtggctcggcgactcgaccgggaggagagggatgcgtataacttgcgggttacagcc
acagactcaggctcccccccactgagggccgaagctgcctttgtgctgcacgtcaccgat
gtcaatgacaatgctcctgccttcgaccgccagctctaccggcccgaagccctgcctgaa
gttgcactgcctggcagctttgtggtacgggtgacagcccgggatcctgaccaaggttct
aatggtcaagtgacctatagcttggctcctggcactcacactcactggttctccgtcgac
cccacttcaggcattatcaccactgctgcctctctggactatgagttggaacctcagcca
cagctgattgtggtagccacagatggcggccttcccccattagcctcctcggccaccgtt
agtgtggccctgcaagacgtgaatgataatgagccccagttccagagaactttctacaat
gcctcattgccggagggcactcagcctggaacctgtttcctgcaggtgactgccacagat
gctgatagtggcccatttggcctcctctcctattccttgggtgctggacttggagcttct
gggtctcccccatttcgcattgatgcccacagtggtgatgtgtgtaccacccggatcctg
gatcgtgaccagggcccctccagctttgactttacagtgacggccgtggatgggggagga
ctcaagtccatggtatatgtgaaagtgtttgtgtcggatgaaaatgacaacccacctcag
ttttatccacgcgagtacgctgccagtctgagtgtccagagctcaccaggcacagctgtg
ctgagggtacgtgcccatgaccctgaccagggaccccatggacgactctcctaccacatc
ctagcgggcaatagccccccgctcttcgccttggatgagcactcagggcttctgactgta
gcctggcccttgaccagacgggctaattctgtagtgcagctggagatcggggctcaggat
ggaggtggcctgaaggctgaacccagcgcccgagtcaacatcagcattgtgcctggaact
cccacaccaccaatatttgatcaactacagtatgttttttctgtgccagaagatgtggca
ccaggcaccagtgtgggcatagtccaggcacgcaacccaccaggtcgctcggggcccgtg
accctcgccctatcagctggagatccccggggactcttctccctagatatgacctcagga
ctgttaaaaactcttcgccctctggaccgggagcttctgggaccggtgttggagctggag
gtgcgagcaggcagtggggtgcccccagcttatgccatagctcgggtgcgtgtgatgctg
gacgatgtgaatgacaactcccctgctttccctgcacctgaagacactgtattactgcca
cccaacactgctccaggaactcccatctacacactgcgggctgtggaccccgactcggga
gttaacagccgaatcacctttaccctgcttgctggaggggatggggctttcaccgtggac
cccactacaggccatgtacggcttacaggacctctggggcctccagggaggccagatcat
gaactggagctagaggcacgggatgggggttccccaccacgcaccagccactttcgactt
cgggttgtggtccaggatttggagaaccatggactagctccccgatttgacagtcctagc
taccgtgtggatctgccctcaggaaccacccctggagcccaggtcttgcaagtacaggcc
caggcaccagatgggagccctgtcacctatcaccttgcagcagatggagccagaagcccc
tttgacctcgaatcacagagtgggtggctctggttacgggcagccctggaccgcgagtcc
caggagttatatacactgaaggtaatggctgtatccgggtccaaagctgagttagggcaa
cagacagccacagccacagtgagggtcaacatcctcaaccagaatgatcacagtccccgc
ttgtctgaagatcccaccttcctggctgtggctgagaaccagcctcctgggaccagtgta
ggccgggtctttgccactgaccgagactctggacctaatgggcgtctgacctacagcctg
caaccgctgtcagaagacaacaaagccttccgcatccaccctcagactggagaagtgacc
acactccaaaccctggaccgagagcagcagagcagttaccagctcccggtgctagtgcag
gatgccgggagccctccgcgaagcaccacaggcacagtgcacattgcggtgctcgacctc
aatgacaacagtcccaccttcctgcaggcttccggggctgctggtggggggcttcctgta
caggtaccagatcgtgtgcccccaggaacaccagtgacaacacttcaggccaaggatccg
gatgagggggagaatgggaccatcctttacatgctaactggtcctggctcggagctcttc
tctctgcaccctcactctggagaactgcttactgcagcatccctgatccgcgcagagcgg
ccccactacgtgctgaccctgagtgcccaggaccaaggcagccctcctcggagtgccagc
ctccagctgctggtgcaggtgctcccctctgctcgcgtggccgagccaccgcccgatctg
gcagagcctgacccggcagctccagtacccgtcgtgctgactgtgacagcagtcgagggg
cttcagcccggatccctgttgggctccgtggcacctccagagcctcctggggtgggcgca
ctcacctacaccctcgtagggggcgccgaccccgagggcaccttcgcgctggatgcgacc
tccgggcgtttgtacctggcgcggcctttggacttcgaggccggccccgcttggcgcgcg
ctcacggtgcgcgccgaggggccgggaggcgcgggcgcgcggctgctgcgcgtgcaggtg
cgcgtgcaggacgagaacgagcacgcgccggccttcgcgcgcgacccgctggcgctggcg
ctaccggagaaccctgagcccggcgcggcgctgtacacgttccgcgcgtcggacgccgac
ggcccgggccccaacagcgaggtgcgctaccgcctgctccgccaggagccgccggtgccg
gctcttcgcttggacgcgcgcaccggggcgctcagcgctccgcgcggcctcgaccgggag
accacgcccgcgctgctgctgctcgtggaagccaccgaccggcccaccaatgccagtcgc
cgccgcgcagctcgcgtctccgcacgcgtcttcgtgacggacgaaaatgacaacgcaccg
gtgttcgcctcgccctcccgcgtgcgcctcccggaggaccagccgcccgggcccaccaca
ctgcacgtggtggccagagacccagacctgggggaggccgcgcgcgtgtcctatcgcctg
gccgctggaggggacggccacttccggctgcacgccagcactggagccctgtccgtggtg
cggcccttggaccgagagcagcgagctgagcacatcctgaccatcgtggcctcggaccac
ggttccccgcctcgctcatccacccagctcctgactgtcagcatcattgatgtcaacgat
gaggcgcccactttccagcagcaggagtacagcgtcatcttgcgtgagaacagcccccct
ggcacatctctgctcactctgcaggcaactgaccctgacctgggggccaatgggcaagtc
acttatggaggtgtttctggcgaaagcttctctctggaccctaacactggagttctcacg
actctccgagccctggatcgggaggaacaagaggaaatcaacttgacagtatatgcccgg
gacagaggctcaccccccttgttaactcatgtcacagtacgtgtgactgtggaagatgag
aatgaccatgctccgacctttgggaatgcccacctttctctggaagtgccagagggccaa
gatccccagactcttaccacactacgggcctctgacccagacataggagccaatgggaag
ttggagtaccacatcctggatggagacccatcaggtgcctttgccctagacgttgcctct
ggggagtttggaactgtgcggccactagatcgggaagtggaaccatccttccagctgcgg
atagaggcctgggatggaggccagccagctcgcagtgctactctgcttgtgacagtgact
gtactagatgccaatgaccatgccccggcctttcctgttcctgcctactcagtggaagtg
cccgaagatgcccctgcagggacactgctgctgcagctacaggctcatgatcctgatgct
ggtgccaatggccgtgtgacctattacctgggttcaggcacagcgggatccttcctgcta
gagccttcttctggggaactacgtacagccacagcgctggacagagaacaccttcccagc
tacaccttctctgtgagtgcggtggacagtgcagctgccgggccgctgagcagcacggta
cctatcaccgtcacggtgcgcgacgtcaatgaccacgcacccactttccctaccagtcct
ctgcgcctgcgcctcccccgtccaggccccagcctcagtaccccaacactggctctggcc
acactgcgagctgaagatcgtgatgccggtgccaacgcttccatcctataccggctggca
ggcacaccaccacctggcaccaccgtggactcttacacaggtgaaatccgtgtgacccgc
tctcctgcagctctgggaccccgagatcgtgtcctcttcatcgtggctaccgatcttggc
cgtccagctcgctctgccactggagtggtcatcgttggactgcagggggagcctgaacgc
ggaccccgctttccccgagcaagtagtgaagctgtgctccgtgaaaatgcacctccaggg
acttctgttgtctcccccaaggctgtccacacagggggctcaagtggaccaatcatctat
agcattctcagcggcaatgagaaagggatcttctctatccagcctagtacaggagccatc
acagttcgtgcagcagaggggctggactttgagacgagcccacgtctgcgactggtgctg
caggcagaaagtggaggagcctttgccttctctgtgctgaccctgaccctgcaagatgcc
aatgacaacgctccccgtttcctgcgaccccactacgtggctttcctgccagaatctcgg
cccttggaggggcccctgctgcaggtggaggcggacgacctggatcaaggctctggagga
cagatctcctatagtctggctgcgtcccagccagcacggggcttattccatgtagaccca
gccacaggcactatcaccaccacagctatcctggaccgggagatctgggctgaaacacgg
ctagtgctgatggccacagacagaggaagcccagccctggtgggctcagccacactgaca
gtgatggtcatcgataccaatgacaaccgccctaccatcccccagccctgggagcttcga
gtgtcagaagatgcactgttgggctcagagattgcacaggtaacagggaatgatgtggac
tctggaccagtgctgtggtacgtgctgagcccctctggaccccaggatcctttcactatt
ggccgctatggagggcgtgtctccctcatgggccccttagactttgagcagtgtgaccac
tacgacctgcagctgctggcgcgtgatggacctcatgagggccacgccaacctcacggtg
cttgtggaggatgtcaatgacaacacacctaccttcgcacatagtctctaccaggtaatg
ctgctggagcatacaccgccaggcagcgccattctctcggtctctgctacggaccgagac
tcaggtgccaatggccacatttcctaccatctggcttctcctgtggagggcttcagtgtt
gaccccaacaatggaactttattcacaacaatgggaacagaggccttaggccatgagggg
ccaggagtgttggatgtggtgctggaagcacgagatcatggagctccacgccgggtagcc
cgagccacagtgcatgtccagctgcaagaccagaatgaccatgccccaagcttcactctg
ccacactaccgcgtggctgtaactgaagatctgccccctggttcaaccctgctcaccctg
gaggccacagacgccgatgcaagccgcacccatgccaccgtagactatagcatcattagt
ggcaacaagggccgagtcttccagctggaacctcggttggctgaagctggggagggtgtc
ggaccaggtcctcaggcattgggctgcctagtattgcttgaaccactagactttgaaacc
ctaacacagtacaacctaactgtggccgcagctgaccgagggcagccacctcgaagttca
gcggtgtccgtaactgtgtccgtactagatgtcaatgacaacccacctgtctttacccga
gcatcctaccgtgtgacggtacctgaggacatgcctgtaggtgctgagctgctgcacgtg
gaggcctctgatgctgaccctggcccgcatggccttgtgcatttcaccctcagttcaggt
gaccccctggggctctttgagctggatgagagctcgggagccttgcgactggctcactcc
ctggactgtgagacccagtctcgacatcagctcgtagtgcaggctactgaccctgctggg
gcacactttgctttggcaccagtgacaatcgaggtcgaggatgtgaatgaccacggccca
gccttcccactgaatttgctcagtaccagcctggctgagaaccagcccccaggcactctc
gtgaccaccctgcatgccatcgatggggactcgggggctttcgggaagctccgctatagt
ctgttggaggcagggcctgagggccgcgaggcatttgcactgaacagctccagtggggag
ctgcgggcgcgagtgcccttcgattacgagcacaccggaagcttccggctgctagtgggt
gctgctgatgctggcaatctctcggcttctgtcactgtgtcggtgctagtgactggagag
gatgagtacgaccccgtgttcctagctccagctttccacttccaagtgccagaaggtgct
cagcgaggccacagcctgggccatgtgcaggccacagatgaagatgggggtgctgatggg
ctggtgctctattcccttgcctcctcttctccctactttgctatcaaccagactacaggt
gccctataccttcgggtggacagtcgggctccaggcagtggaacagccacttccgggggc
gggggacggacccggcgtgaaactccacgggagctgaggctggaggtagtagcacggggg
cctctgcccgggtcccggagtgccacagtgcccgtgactgtggatatcacccacactgca
ctgggcctggcacctgatcttaacctgctcttggtgggggctgtggcagcctccttggga
gtcgtggtggtacttgcactggcagccctggttctagggcttgttcgggcccgtaaccgc
aaggctgagtcagctcctggcccaatgtcacaggcagcgccccttgccagtggctccctg
cagaagttgggccgggaaccacctagtccaccaccctcggaacacctgtatcatcagaca
ctccccagctatgggggaccaggagctggaggcccgtacccccgtggcggatccctggac
ccttcacattcaagtggccgaggctcggctgaagctgcagaggacgatgagatccgcatg
atcaatgagttcccacgtgtggccagtgtggcatcttccctggcggcccgtggtcctgac
tcaggcatccagcaggatgcagatggactgagtgacacatcctgtgagccacctgcccct
gacacctggtataagggccgcaaggcagggctgctgctgccaggtgcaggagccactctg
taccgagaggaagggaccccagccactgccacagcctttcttgggggctgtggcctgagc
cctgcaccctctggggactatggattcccggcagatggcaagccatgtgtggcaggggcg
ctgaccgccattgtcgctggcgaagaggagctccgtggcagctacaactgggactacctg
ctgagctggtgccctcagttccagccactagccagtgtcttcacagagatcgctcggctc
aaggatgaagctcggccatgccccccagctccccgtattgacccaccacccctcatcact
gctgtggcccatccaggagccaagtccgtgccccccaagcctgccagcacagccatagcc
cgtgccatcttcccaccagcttctcatcgctcccccatcagtcatgaaggatccctgtcc
tcagccgccatgtcccccagcttttcgccctctctgtctcctttggctgctcgctcacct
gttgtctcaccgtttggagtggcccagggcccctcagcttcagcactcagcacagaatct
ggcctggagccacccgaagacacagagctacacatctag
DBGET
integrated database retrieval system
