Perognathus longimembris pacificus (Pacific pocket mouse): 125361253
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Entry
125361253 CDS
T08928
Symbol
Cstf3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125361253 (Cstf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125361253 (Cstf3)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
125361253 (Cstf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
TPR_16
TPR_19
TPR_6
Motif
Other DBs
NCBI-GeneID:
125361253
NCBI-ProteinID:
XP_048215542
LinkDB
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Position
13:complement(36434461..36507545)
Genome browser
AA seq
717 aa
AA seq
DB search
MSGDGAAEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
NTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY
LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH
SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEY
YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK
SGEIWARFLAFESNIGDLASILKVEKRRFAAFKEEYEGKETALLVDRYKFMDLYPCSASE
LKALGYKDVSRAKLAAIIPDPVVAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPP
GLHPVPGGVFPVPPAAVVLMKLLPPPICFQGPFVQVDELMEIFRRCKIPNTVEEAVRIIT
GGAPELAAEGNGPVESNAVLSKAVKRPNEDSDEDEEKGAVVPPVHDIYRARQQKRIR
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggagacggcgctgcggagcaggcagctgaatatgtaccagagaaggtgaagaaa
gccgaaaagaaattagaagagaatccatatgaccttgatgcttggagcattctcattcga
gaggcacagaatcaacctatagacaaagcacggaagacttatgaacgccttgttgcccag
ttccccagttctggcagattctggaaactgtacattgaagcagagattaaagctaaaaat
tatgacaaagttgaaaagctatttcagagatgccttatgaaggttttgcacattgattta
tggaagtgctatctttcctatgttcgggaaacgaagggtaaactaccaagttacaaagaa
aaaatggctcaagcttatgactttgcactggataaaattggaatggaaattatgtcttat
cagatttgggtggattacatcaatttcttaaaaggcgtggaagctgttgggtcttatgca
gaaaatcagaggataacagctgtccgaagagtttatcagcgaggttgtgttaatccaatg
atcaacattgaacagctttggagagactataacaagtatgaagagggcatcaatattcat
ttagctaaaaaaatgattgaagatcggagtagagactacatgaatgctagacgtgtagca
aaggaatatgagacggtaatgaaaggcttggatcggaatgctccttcagtgcctcctcag
aatactcctcaagaagctcagcaagtggatatgtggaagaagtatatacagtgggaaaag
agcaaccctcttcgtacagaggatcagactcttataacaaaaagagttatgtttgcatat
gaacagtgcctgcttgtgttgggccatcaccctgatatttggtatgaagctgcccagtat
ctggagcagtcaagtaaactgctagcagagaagggagatatgaataatgccaaattattt
agtgatgaagctgctaatatatatgagagagccataagcactttactgaagaagaatatg
cttctttattttgcatatgctgattatgaagagagccgcatgaagtatgagaaggttcac
agtatatataacagacttctggcaattgaggatattgaccccacgttggtatatatccaa
tatatgaaatttgcaaggagagcagaaggtatcaagtctggaagaatgatatttaaaaaa
gcaagagaggataccagaacccgccatcatgtctacgttaccgcagcactcatggaatat
tactgtagtaaagacaaatcagtcgcctttaagatttttgagctgggactcaagaaatat
ggtgacattccagaatatgtcttggcttatatcgactatctatctcacctcaatgaggac
aataatacccgagttttgtttgaacgagttttaacgtctggaagcctccctcctgagaag
tctggagaaatctgggcccgatttctagcttttgaaagtaatattggtgatttagccagt
atactcaaagtggagaaaaggcggtttgcagcattcaaagaagagtatgaaggcaaagag
acagccttactggtcgacagatacaagtttatggatttatatccttgctctgcaagtgaa
ctgaaagccctggggtacaaggatgtctcccgtgctaagctagcagctataattccagac
ccagttgtagctccttctatagtgcctgttctgaaagatgaagtggatagaaaaccagag
taccctaagccagacactcagcagatgattccatttcagccacgacatttagcacctcca
ggcttgcaccctgtccccgggggagtgtttccagtgccgcctgcagccgtcgtcttgatg
aaacttctccctcctcctatttgtttccagggtccttttgttcaagtggatgaactgatg
gaaattttccgaagatgcaagataccaaatactgttgaggaagcggtgcggatcattact
ggtggggccccagagctagctgcggaaggcaacggaccggtggaaagtaatgctgtcctc
agcaaggctgtcaagaggcccaatgaggactccgatgaagatgaggaaaagggggctgtt
gtccctcctgttcatgacatttacagagcgaggcagcagaagcggattcgatga
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