Perognathus longimembris pacificus (Pacific pocket mouse): 125361396
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Entry
125361396 CDS
T08928
Symbol
Atg13
Name
(RefSeq) autophagy-related protein 13 isoform X1
KO
K08331
autophagy-related protein 13
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04136
Autophagy - other
plop04140
Autophagy - animal
plop04211
Longevity regulating pathway
plop05010
Alzheimer disease
plop05014
Amyotrophic lateral sclerosis
plop05016
Huntington disease
plop05017
Spinocerebellar ataxia
plop05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125361396 (Atg13)
04136 Autophagy - other
125361396 (Atg13)
09150 Organismal Systems
09149 Aging
04211 Longevity regulating pathway
125361396 (Atg13)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
125361396 (Atg13)
05014 Amyotrophic lateral sclerosis
125361396 (Atg13)
05016 Huntington disease
125361396 (Atg13)
05017 Spinocerebellar ataxia
125361396 (Atg13)
05022 Pathways of neurodegeneration - multiple diseases
125361396 (Atg13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125361396 (Atg13)
03029 Mitochondrial biogenesis [BR:
plop03029
]
125361396 (Atg13)
Membrane trafficking [BR:
plop04131
]
Autophagy
Autophagosome formation proteins
ULK complex
125361396 (Atg13)
Atg1 complex
125361396 (Atg13)
Mitochondrial biogenesis [BR:
plop03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
125361396 (Atg13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
125361396
NCBI-ProteinID:
XP_048215804
LinkDB
All DBs
Position
13:48266904..48312615
Genome browser
AA seq
550 aa
AA seq
DB search
METDLNSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPE
VTHEAKKALAGQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNR
LSLLLKSLLAITRVTPAYRLSRKQGHEYVILYRIYFGEVQLNGLGEGFQTVRVGTVGTPV
GTITLSCAYRINLAFMSTRQFERTPPIMGIIIDHFVDRPYPSSSPMHPCNYRTAGEDAGV
TYPSVEDSQEVCTTSFSTSPPSQCVFTVTKAHFQTPTPVVTDTLRVPMAGLAFAHHLSSS
RLSYQPAVLGLGSADLAYPVVFAAGLNAPHPHQLMVPGKEGGVPLAPTQPTHGAQADQER
LATHTPSDGIHCAATPSSSEDAETVSTSSEGRASPHDVLETIFVRKVGAFVNKPINQVTL
TSLDIPFAMFAPKNLELEDADPMVNPPESPETASPLHGSLHSNGSSGGSSGNAHDDFVMI
DFKPAFSKDDILPMDLGTFYREFQNPPQLSSLSIDIGAQSMAEDLDSLPERLAVHEKNVR
EFDAFVETLQ
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggaaactgatctcaattcccaggacaggaaggacctggacaagtttattaaatttttt
gccctcaagactgtccaagtgattgtccaggctcgacttggtgaaaagatttgcactcgt
tcgtcatcttccccaacgggttcagattggtttaacttagcaatcaaggacatcccagag
gtgacacatgaagcaaagaaggcattggcagggcagctgcctgcggttgggcgctctatg
tgtgtggagatctcactcaagacttctgagggagattccatggagctggaaatttggtgt
cttgaaatgaatgaaaagtgtgataaagaaatcaaagtttcctacacggtctataacaga
ctgtcattgctgctgaagtctcttcttgctataactagggtgacaccagcctacagactg
tccagaaaacaagggcatgaatatgtcatattgtacaggatatattttggggaagttcag
ctgaatggcttaggagaaggcttccagacagttcgtgttgggacagtgggcacccctgtt
ggcaccatcactctttcttgtgcttaccgaattaacttggcattcatgtctaccaggcaa
tttgagaggaccccacctatcatggggattatcattgatcactttgtggaccgtccctat
cctagctcctctcccatgcacccctgcaattacagaactgcaggtgaggatgctggagta
acatatccatcagtggaagactctcaagaagtgtgtaccacctctttttccacgtcccct
ccctcccagtgtgtgtttactgtcacaaaggcacattttcagacccctactcctgtggtg
acggacactctgagggtccccatggcaggactggcctttgcccatcatctctcaagctct
cgcctttcctatcagcctgctgtcctgggccttggatcagctgacctggcttatccggta
gtgtttgctgctggcttaaatgctccacaccctcaccagctcatggttccggggaaggaa
ggtggggtaccccttgctcccacccagcccactcatggcgcccaggctgaccaggaaaga
ttggcaactcacacaccttccgacggcatccactgtgctgctaccccttccagcagtgag
gatgcagaaactgtatccaccagcagtgagggacgggcctccccacacgatgtcctggag
accatctttgttcgaaaagtgggagcctttgtcaacaaacccatcaaccaggtgactctg
acaagtttggacataccttttgccatgtttgctcccaagaatttggagctggaggatgct
gatcccatggtgaatcctcccgagtccccagagacggcgtctcctctgcacggcagcctg
cactccaatggctccagtgggggcagcagtggcaatgcgcatgatgactttgtgatgatc
gacttcaaacctgctttttctaaagatgacattcttccaatggacttggggactttctat
cgtgaatttcagaacccccctcagctgagcagcctttccatagatattggagctcagtcc
atggctgaagacttggattcactaccagagaggctggctgtgcatgagaagaacgtccgc
gaatttgatgcctttgtagaaaccctgcagtaa
DBGET
integrated database retrieval system
