Perognathus longimembris pacificus (Pacific pocket mouse): 125361534
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Entry
125361534 CDS
T08928
Symbol
Patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125361534 (Patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125361534 (Patl1)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125361534 (Patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
125361534 (Patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
125361534
NCBI-ProteinID:
XP_048216013
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All DBs
Position
13:complement(53649201..53676574)
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AA seq
770 aa
AA seq
DB search
MFRYESLEDCPLDEDDDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PAAANEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVHTRPVLQPQPGS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSP
IIGSPPVRAVPIGTPPKQMAVPSFNQQILCPKPVHVRPPMPPRYPAPYGERMSPNQLCGV
PNSSLLGHPFPPSVPPVFSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
LQGRVGQMLPPAPGFRAFFSAPSTAAPPPQQHPSGPGPHLQNLRSQAPMFRPDTTHLHPQ
HRRLLHQRQQQNRNQHRNLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKLSAAEEMQGDGPKKERTKLITPQVARLEHAYKPVQFEG
SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
RRYLLSLEEERPALIEERKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
LPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPPVTVTSLLQQLM
NLPQSAAAPAPSNPHLTAVLQNKFGLSLLLVLLSRGEDLQSSDLASESTQNNQWTEMMFM
ATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctctggaagattgtcctctggatgaagatgatgatgcatttcaa
ggtctgggagaggaagatgaggagatcgatcaattcaatgatgatacatttgggtcaggt
gcagttgatgatgattggcaggaagcacatgagcggctggctgagttggaagaaaagctg
ccagcggctgctaatgaacaaacaggcaatggagagagagatgaaatggacttgctgggt
gaccatgaggagaatctggcagaaaggctcagtaagatggtgattgaaaatgaacttgaa
gatccggctatcatgagagcagtgcatacaaggccagttttgcaacctcaaccaggaagt
ctgaattctagtatctgggatggatctgaagttctgaggcgaatccgaggaccactactt
gctcaggaaatgccgacagtgtctgtattagaatatgccttgcctcagaggcccccacag
ggcccagaagatgaccgggacctttctgagcgtgcattaccaagacgatcaacttcacct
atcattgggagtcctcctgttagagctgtccccataggcacaccacctaagcagatggct
gtacccagcttcaaccaacagatcctgtgtccgaagcctgtccatgttcggccgccgatg
ccaccacgttatcctgctccctatggtgagaggatgtctccaaatcagctctgtggtgtc
ccgaactcttccctcctgggtcacccttttcctcctagcgttcctcccgttttcagcccc
ctccagagagcacagcttcttggaggagcacagttacagcctggacgaatgtctcccagc
cagtttgcacgagtccccgggtttgtaggtagcccactggctgccatgaatccaaagcta
ctgcaagggcgagttgggcagatgcttcccccagcaccaggcttccgtgccttctttagt
gctccgtccactgctgcaccccctccacagcagcacccttcaggccccggacctcacctg
caaaacctaagatctcaggccccaatgtttagaccagatacaactcaccttcatccacag
catcgacggctcttgcatcagaggcagcaacagaataggaatcagcatcggaatctcaat
ggtgctggagatagaggaagtcaccggagcagccaccaagatcatctccgaaaggatccc
tatgccaatctcatgttgcagcgggagaaggattgggtctctaaaatccagatgatgcag
ctgcaaagcactgacccctacctggatgatttttattaccagaattacttcgaaaaactg
gagaaactatctgctgctgaagaaatgcaaggggatggccctaaaaaggagcgcaccaag
cttatcacccctcaggtggccaggctagagcatgcctataagccagtgcagtttgagggc
tcgttggggaagcttactgtctctagtgtgaacaatcctcgaaaaatgattgatgctgtt
gtgacatctaggagcgaggatgatgagacaaaagaaaaacaggttcgagacaaaagaagg
aaaacccttgtcattattgaaaagacctacagcttactccttgatgtggaggattatgaa
aggcgctatctcctaagtctagaagaagaacggcctgccctgattgaagaaaggaagcac
aaaatctgtagcatgtatgacaacttgaggggcaaattgcctggacaagagaggccaagt
gatgaccactttgtacagatcatgtgtatccgaaaagggaagagaatggttgcccgcatt
ctcccttttctgtccacagagcaagcagctgacatcctcatgacaactgccaggaacctc
cctttccttatcaagaaggatgcgcaagatgaggtgctgccgtgtttgttgagtcccttt
tctcttctcctctatcatcttccaccagtgactgtcaccagccttctgcaacagctaatg
aacctacctcaaagtgcagccgcaccagcaccctccaaccctcacctcactgctgtgctc
cagaacaagtttggcctgtcactgctccttgtcctcctgagccgtggggaagacctacag
agttcagaccttgcttcagaatccacgcaaaacaaccagtggacagagatgatgttcatg
gcaacccgagaacttctacggattccccaagctgccctggccaagccgatctctataccc
accaacctagtgtccctcttctctcgctatgttgaccggcagaaactgaacttgctggag
acaaaactgcagctagttcaggggattcggtag
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