Perognathus longimembris pacificus (Pacific pocket mouse): 125361645
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Entry
125361645 CDS
T08928
Symbol
Atg2a
Name
(RefSeq) LOW QUALITY PROTEIN: autophagy-related protein 2 homolog A
KO
K17906
autophagy-related protein 2
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04136
Autophagy - other
plop04140
Autophagy - animal
plop05010
Alzheimer disease
plop05014
Amyotrophic lateral sclerosis
plop05016
Huntington disease
plop05017
Spinocerebellar ataxia
plop05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125361645 (Atg2a)
04136 Autophagy - other
125361645 (Atg2a)
09160 Human Diseases
09164 Neurodegenerative disease
05010 Alzheimer disease
125361645 (Atg2a)
05014 Amyotrophic lateral sclerosis
125361645 (Atg2a)
05016 Huntington disease
125361645 (Atg2a)
05017 Spinocerebellar ataxia
125361645 (Atg2a)
05022 Pathways of neurodegeneration - multiple diseases
125361645 (Atg2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125361645 (Atg2a)
03029 Mitochondrial biogenesis [BR:
plop03029
]
125361645 (Atg2a)
Membrane trafficking [BR:
plop04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
125361645 (Atg2a)
Mitochondrial biogenesis [BR:
plop03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
125361645 (Atg2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG2_CAD
VPS13_N
Motif
Other DBs
NCBI-GeneID:
125361645
NCBI-ProteinID:
XP_048216174
LinkDB
All DBs
Position
13:complement(57847474..57868837)
Genome browser
AA seq
1989 aa
AA seq
DB search
MTNGSERGGRGRASRGAAWRREKRRGEPGALVNSAAGQGSPADGSGGGRAPAFPEMSRWL
WPWSNCVKERVCRYLLHHYLGHFFQEHLSLDQLSLDLYKGSVVLRDIHLENWSVNEVLES
MESPLELAEGFVGSIEVAVPWAALLTDHCTVRVSGLQLTLQPRQSAGPGGADSQSWASCM
TTSLQLAQECLREGLPEPSEPPQPLEGLEMFAQTIETVLRRIKVTFLDSVVRIEHSPGRG
EHGVALEIHVQRLEYCDESVRDPGQAPPVDVHQPPAFLHKLLQLAGVRLCFEELPSQAEP
PEPPLQIGSCSGYMELVVKLKQNEAFPGPKLEVAGQLGSLHLLLTPQQLRQLQDLLSAIS
LTDAEGLADKLNKSRPLGAEDLWLIEQDLNQQLQAGAVAEPLSPDPVTNPLLNLDSTDLF
FSMAGLTSSVASAVSELSLSDVDLSSSVHSNVASHRLSAPAHPAGKTAPTPVPGTMRPDS
LLKMTLGGVTLTLLQTSAPDPGPPDLATHFFTEFDATKDGPFGSRDFQHLRPRFQKACPC
SHVRLTGTAVQLSWELRASSRGRRTATTEVHLGQLEVLECLWPRGSAEPEYTEILSFPSN
LSTQVSARPCAHLRHTQTLRRLPKSRARRSIACHCHSEVVLDLAEFQADVELGSLDRLAA
LLHLATAPHKPPTGLLTEPPWTTEQQTVFRLSAPRATLRLCFPIADLRPERDPWAGRAVR
TEQLRLELSEPQFRSELSSGPGPPAPTRLELTCSDLHAIYEEGEKPPIPCLRVARAVDPK
STGRKYFLPQVAVTLNPRSSDTQWETGQDKGEDLELSTESPCELREPEPSPFSSKRTMYE
TEEMVIPGDPEEMRTFQSRTLASSRCSLEVILPSAHVFLPSKEVYESIYNRINNDLLMWE
PADLLPSPGPAAHPSGFPGSSGFWHDNFKMCKSAFKLDSDSDEEDVKFFSVGASGAPQAP
APEPPRHHTQSTFSTLVRVLKGRITAFCEAKDEAGNRQEGRHGELVLDVEHGTIFNVSQY
RGQPGFGYFCVEAEKAALHHRAAVDASVLPSHLELPSFAPPAHLAPTIYPSEEGVSERGS
SGRKGQGQGQSLPMLSAAVRIHLDPHKNIKEFLVTLRLYKATLRHYMALPEQSWYSQLLE
FLDVLDDPVLGYLPPTVITVLHTHLFSCAVDYRPLYLPVRVLATAETFTLSSNIVMDTST
FLLRFILDDSALYLSDKCEVESLDLRRDYVCVLDIDLLELVIKTWKGSTEGKLSQPLFEL
RCSNNVVHVHSCADSCALLANLLQYVTSSGDLHPPPRPPSPTEIAGQKLSESPASVPSCP
PVETALINQRDLTDALLDTERSLRELAQPSGDPLPQASPVSVYLFPGEGSGAQAPSPPPG
GPAGTFGSCPEGKAEEKEEEEGDGDTMDSDEFCILDAPGLGIPPRDGEPVVTQLHPGPIV
LQDGYFSRPLGSTDLLRAPAHFPVPSSRVVLREVSLIWHLYGGRDFGPYPSHRARVGLAG
PRSSPSRCSGPSRPQNSWRTQGGSGRQHQVLVEIRLSKVSFQHEVYPEEPEPGTDADSAP
APGQEPEERPLSRQVLIVQELEIRDRLASSQINKFLHLHTSERLPRRTHSNMLTIKALHV
APTASPGGPECCLRVSLMPLRLNVDQDALFFLKDFFTSLAAGINPIFPGEPSEARSEARG
RPRSPRDRQPEEMSGSQEASGGSWGSAAEQQPIYFREFRFTSEVPICLDYHGKHVAMDQV
GTFAGLLIGLAQLNCSELKLKRLCCRHGLLGVDKVLGYALNEWLQDIRKNQLPGLLGGVG
PMHSVVQLFQGFRDLLWLPIEQYRKDGRLMRGLQRGAASFGSSTASAALELSNRLVQAIQ
ATAETVYDILSPAAPVSRSLQDKRSAQRLRKGQPPADLREGVAKAYDTVREGILDTAQTI
CDVAARGHEQKGLTGAVGGVIRQLPPTVVKPIIVASEATSNVLGGIRNQILPDAHKDHAL
KWRSEEAQD
NT seq
5970 nt
NT seq
+upstream
nt +downstream
nt
atgaccaatgggagcgagcgtggggggcgtggccgcgcgtctaggggcgcggcctggcgc
cgagagaagcggcggggtgagccgggggctctagtgaacagcgcagccggacagggatcg
ccggcggacggtagcggaggcggccgggccccggcgttccccgagatgtcacgatggctg
tggccatggtcgaactgtgtcaaagaacgggtctgccgctacttgctacaccactacttg
ggtcacttcttccaagaacacctgagcctggaccaactcagcctggatctgtacaagggc
agcgttgtcctgcgggatatccacctggagaactggtcggtgaacgaggtgctggagtcg
atggagtcgccgctggagctggcggaaggcttcgtgggctccatcgaggtggcggtgccc
tgggccgcgctgctcactgaccactgcaccgtgcgcgtgtccggcctccagctcacgctg
cagccccgccagagcgcagggccggggggtgccgactcgcagagctgggcttcgtgcatg
accacgagcctgcagctggctcaggagtgtcttcgggaagggcttcctgagccctcggag
ccgccgcagcccctggaggggctggaaatgttcgctcagaccatcgagacagtgctgcgg
aggatcaaggtgacctttctggacagcgtggtgcggatagagcactcgccgggccgtggg
gagcacggcgtggccctggagatccacgtgcagaggctggagtactgtgacgagtcggtg
cgcgacccaggccaggccccacccgtggacgtgcaccagccgcccgccttcctgcacaag
ctgctgcagctggcgggggtccgcctgtgctttgaggagctcccctcacaggcagagccg
ccggagccgcccttgcagattggtagctgctcagggtacatggagctggtagtgaagctg
aagcagaacgaggctttcccaggccccaagctggaggtggcagggcagctgggctccctg
cacctgctcctgaccccgcagcagctccggcagctccaggacctgctcagcgccatcagc
ctcacagacgcggaaggccttgctgacaagctgaacaagagtcgccctctgggtgctgaa
gacctgtggctgattgaacaggatctgaaccagcagctgcaggcaggcgccgtggccgag
cccctcagcccagaccccgtgaccaaccccctcctcaacctggacagtactgacctcttc
ttctccatggccggcctcaccagcagcgtggcttccgccgtctccgagctctccctctct
gacgtagacctcagctcctccgtgcacagcaacgtggcttcccaccgactctccgcccca
gcccaccccgctggcaagacagccccaactccagttccgggcaccatgcgccccgactcg
ctgttgaagatgaccttgggtggtgtgaccctgaccttgctccagacgtctgcccccgat
cccggaccacctgaccttgctacccacttttttaccgagtttgatgccaccaaggatggg
ccttttggctcccgggatttccagcaccttcggccgcgcttccagaaagcttgcccctgc
agccatgtccggctcacgggcacagccgtccagctgtcctgggaactgcgggccagcagc
cggggccggcggacggccaccacggaggtgcacctcgggcagctggaggtcctggagtgc
ctgtggcccaggggatctgcagaacccgagtacacagagatcctgagcttccccagtaac
ctgagcacccaggtctccgcgcggccctgcgcccacctacgccatacacagaccctgcgc
cggctgccgaagagccgggcccggcgctccattgcctgccattgccattcagaagtggtc
ctggacctggcggaattccaggccgacgtggagctggggtccctggaccggctggctgcc
ctactgcacttggccactgcgccccacaagccacccactggcctgctgacagagcccccg
tggactacagagcagcagacagtgttccggctctcggccccccgggccacgctgcggctg
tgcttccccatcgctgacctgcggcccgagcgggacccctgggcgggccgggccgtgcgg
actgagcagctgcggctggaactgagtgagccccagttccggtcggagctcagcagcggg
cctggccccccagcccccacccggctggaactcacctgctctgacctgcatgcaatctac
gaggaaggagagaagccacccatcccttgcctgagggttgccagagctgtggaccccaag
agcaccgggcgcaagtacttcctgccacaggtagcggtgaccctgaacccccggtcgagt
gacacgcagtgggagacaggccaggacaagggcgaggacctagagctgtccaccgagagc
ccatgtgagctacgggagcctgagccctcacccttctcctcgaagaggaccatgtatgag
acggaggagatggtgatccctggagaccctgaggagatgaggacattccagagccggacg
ctggcatcctcccgctgtagcctggaagtaatcctgcccagcgcacacgtcttcctgccc
agcaaagaggtctacgaaagcatctacaacaggatcaacaatgacctactcatgtgggaa
cccgcggacctgcttcccagccccggccctgccgctcacccctcgggcttcccaggctcc
tccggcttctggcacgacaacttcaaaatgtgcaagtccgccttcaagctggactcagac
tctgatgaggaagacgtcaagttcttctcagtaggggcgtcaggtgccccccaagcccct
gcccccgagcccccgagacatcacacccagagcaccttctcgaccctggtgagagtgctg
aagggtcggatcacagccttctgcgaggctaaggacgaggctgggaaccggcaggagggg
cggcacggggagctggtgctggatgtggagcacggcaccatcttcaacgtgtcccagtac
cgcggccagccaggcttcggctacttctgcgtggaagccgagaaggcggccctccatcac
cgagccgccgtggacgcctccgtgctgcccagtcacctggagctgcccagcttcgccccc
ccggcccacctggccccgaccatctacccatcggaggaaggggtgtctgagcgggggtcc
tcaggccggaagggccagggccaaggccagagcctccccatgctgtcggccgccgtgcgc
atccacctggatccccacaagaacatcaaggagttcctggtgacgctgcggctctacaaa
gccaccctgcgccactacatggccttgcccgaacagagctggtactcccagctgttggag
ttcttagacgtgctggatgaccccgtgctgggctacctgcccccgacggtcatcaccgtc
ctgcacacgcacctgttctcctgtgccgtggactataggcccctctacctccccgtgcgc
gtccttgccaccgccgagaccttcaccctctccagcaacatcgtcatggacacgtccacc
ttcttgctcaggttcatcctcgatgactctgccttgtacctgtcggacaagtgtgaggtg
gagagcctggatctgcggcgagattatgtctgcgtccttgacatcgacctcttggagctc
gtcatcaaaacctggaagggcagcaccgagggcaaactgagccagccgctgtttgagttg
cgctgctccaacaacgtggtccacgtgcacagctgcgccgactcctgcgccctgctggcc
aacctgctccagtatgttacgagctccggcgaccttcaccccccaccccgaccccctagc
cccacggagatcgccggccagaagctctccgagagcccggcctccgtgccttcgtgcccc
cccgtggagacagccctcatcaaccagcgggacctgacggatgccctcctggacacagag
cgcagcctccgggagctggcccagccctcaggtgacccccttcctcaagcctcgcccgtt
tccgtctacctattcccaggtgaagggagtggggctcaggctccttcgccccctcctggg
ggccctgccggcaccttcgggtcgtgccccgagggtaaggcagaggagaaggaggaggag
gagggcgatggagacaccatggacagtgatgagttctgcatcctcgacgcccctggcctg
ggcattccgccccgagacggagagcccgtggtgacgcagctgcacccaggtcccatcgtc
ctgcaggacggatacttctcgcggcccctgggcagcacggacctgctgcgggcgccggcc
cacttcccggtgcccagcagccgcgtggtgctgcgcgaggtttctctcatctggcatctc
tacgggggccgagacttcggcccttaccccagccatagagctagagttggcctggcaggc
cccaggagctccccttcccgctgctccggccccagccggccccagaactcctggcgcacg
caaggcggcagcgggcggcagcaccaggttctcgtggagatccggctcagcaaggtgagt
ttccagcatgaagtgtatcccgaggagccggagccgggcacggacgccgactcggccccg
gcgcccggccaggagccggaggagcggccgctgtcccgccaggtgctcatcgtgcaggag
ctggagatccgggaccggctggcctcctcccagatcaacaagttcctgcacctgcacacg
agcgagcggctgccccgccgcacgcactccaacatgctcaccatcaaagccctgcacgtg
gcccccaccgccagccccggcgggcccgagtgctgtctgcgcgtctccctcatgcctctg
cggctcaacgtggaccaggacgccctcttcttcctcaaggacttctttaccagcctggcg
gccggcatcaaccccatattcccaggagagccctccgaggctcgctctgaggcccgaggc
cggccccgcagcccccgggaccggcagccggaggagatgagcggctctcaggaggcctcg
ggcggcagctggggctccgccgcggagcagcagcccatctacttcagggagttccgcttc
acatccgaggtgcccatctgtctggattaccacggcaagcacgtcgccatggaccaggtg
ggcacttttgctgggctcctcatcggcttggcccaactcaactgctcggagctgaagctc
aagcggctctgttgccggcatgggctcctgggtgtggacaaggtgctaggctatgccctc
aacgagtggttgcaggatatccgcaagaaccagctgccgggcctgctggggggcgtgggc
cccatgcactcggtggttcagctcttccaagggtttcgagacctgctgtggctgcccatt
gagcagtaccggaaggacggccgcctcatgcgggggctgcagcgcggggccgcctccttc
ggctcatccacggcctctgcggccctggagctgagcaaccggctggtccaggcgatccag
gccaccgccgagaccgtctacgacatcctgtccccggcggcgcccgtctcccgctcgctg
caggacaagcgctccgcacagaggctgcgcaaaggccagccgcccgccgacctccgggag
ggcgtggccaaggcctacgacaccgtgcgtgagggcatcctggacacggctcaaaccatc
tgcgacgtggcggcgcgcggccacgagcagaaggggctgacgggcgccgtgggcggcgtg
atccgccagctgccgcccacggtggtgaagcccatcattgtggcctcggaggccacgtcc
aacgtcctcgggggcattcgcaaccagatcctgcccgacgcccacaaggaccacgcgctc
aagtggcgctcggaggaggcccaggactga
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integrated database retrieval system
