Perognathus longimembris pacificus (Pacific pocket mouse): 125362107
Help
Entry
125362107 CDS
T08928
Symbol
Nxf1
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03008
Ribosome biogenesis in eukaryotes
plop03013
Nucleocytoplasmic transport
plop03015
mRNA surveillance pathway
plop05014
Amyotrophic lateral sclerosis
plop05164
Influenza A
plop05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125362107 (Nxf1)
03015 mRNA surveillance pathway
125362107 (Nxf1)
03008 Ribosome biogenesis in eukaryotes
125362107 (Nxf1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
125362107 (Nxf1)
05168 Herpes simplex virus 1 infection
125362107 (Nxf1)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
125362107 (Nxf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125362107 (Nxf1)
03009 Ribosome biogenesis [BR:
plop03009
]
125362107 (Nxf1)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125362107 (Nxf1)
mRNA cycle factors
Stress granule specific factors
125362107 (Nxf1)
Ribosome biogenesis [BR:
plop03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
125362107 (Nxf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_8
LRR_4
UBA_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
125362107
NCBI-ProteinID:
XP_048216725
LinkDB
All DBs
Position
13:complement(56125428..56138700)
Genome browser
AA seq
619 aa
AA seq
DB search
MADEGKSYNEHDDRVSFPQRRKKGRGPFRWKYGEGGNRRSGRGGSGIRTSRPEEDDGDVA
MSDAQDGPRVRYNPYATRPNRRGDTWHDRDRIHVTVRRDRAPQERGGAGTSQDGTSKNWF
KITIPYGRKYDKAWLLSMIQSRCSVPFNPIEFHYENTRAQFFVEDASTASALKAVSYKIQ
DRENRKISIIINSSAPPPTVQHELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVA
QNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG
NELKSERELDKIKGLKLEELWLDGNVLCDTFRDQSTYISAIRERFPKLLRLDGHELPPPI
AFDVEAPTMLPPSKGSYFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLSI
PFIPQNPARSNLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDINSFV
VDISAQTSTLLCFSVNGVFKEVDGKARDSLRAFTRTFIAVPASNSGLCIVNDELFVRNAS
PEEIQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSA
QAFTLLKAKDKIPEVAFMK
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaggggaagtcgtacaacgagcatgatgaccgtgttagtttccctcagaga
agaaagaagggccgtggccctttccgttggaagtatggtgaaggagggaaccgtcgatct
ggaagaggcggttctggtattcgaacttcccgacctgaggaagatgatggagatgtggca
atgagtgatgcccaggacggcccccgagttcgatacaacccctatgccacccgaccgaac
cgtcggggtgatacttggcatgatcgagatcgaattcatgttactgtacgaagggacaga
gctcctcaagagagaggaggggctggcaccagtcaagatgggacttcaaaaaactggttc
aagattacaattccttatggcagaaagtatgacaaggcatggctcctgagcatgattcag
agcagatgcagtgtcccctttaaccccattgagtttcattatgagaacacacgggcccag
ttctttgtagaggacgccagtactgcttctgctttaaaggctgtcagttataagatccag
gatcgagagaaccgaaagatatctatcatcatcaattcctctgctccacccccgactgta
cagcatgaattgaaacctgaacaagtagagcagctcaagctgattatgagcaaacgatac
gatggttcccagcaagcgcttgacctcaagggtctccgttcagacccagatttggtggcc
caaaacattgatgttgtcctgaataggagaagctgcatggcggctaccctacgaatcatt
gaagagaacatccctgagctattgtctttgaacttgagcaacaacaggctatacagactg
gatgacatgtccagcattgtgcagaaggcacccaacctgaagatcctaaacctctccgga
aatgaattgaagtctgagcgggagttggacaagatcaaagggctgaagctagaagagctg
tggcttgatggcaatgtcctgtgtgataccttccgagaccaatccacttatatcagcgcc
attcgcgaacgatttcccaagctattgcgcctggatggccacgagttacccccaccaatt
gccttcgatgtcgaagcccccacgatgttaccacccagcaagggaagctattttggaaca
gaaaatctgaagagtctggtcctgcacttcctgcagcagtactatgcaatttatgactct
ggagaccggcaggggctcttggatgcctaccacgatggggcctgctgctccctgagcatt
cctttcatcccccagaatcctgcccgaagcaacttggcagagtatttcaaggacagcaga
aatgtgaagaaacttaaagaccccaccctgcggttccgtctgctgaagcacacacgtctc
aacgtggttgccttccttaatgagttgcccaaaactcagcatgacatcaattcctttgtg
gtagacataagtgcccagacaagtacgttgctgtgtttctctgtcaatggggtcttcaaa
gaagtggatgggaaagccagggattctctgcgagctttcaccaggaccttcatcgctgtt
cctgccagcaattcagggctgtgtattgtaaacgacgagctgtttgtgcggaatgccagc
ccagaagagatccaaagagccttcgccatgcccgcacccacgccttcctccagcccagtg
cccaccctgtccccggaacagcaggaaatgttgcaagcgttctccacacagtctggcatg
aacctggagtggtcccagaagtgccttcaagacaacaactgggactacactagatctgct
caggccttcactctcctcaaggccaaggataagatccccgaagtggcgttcatgaagtga
DBGET
integrated database retrieval system
