KEGG   Perognathus longimembris pacificus (Pacific pocket mouse): 125362213
Entry
125362213         CDS       T08928                                 
Name
(RefSeq) histone-binding protein RBBP4-like
  KO
K10752  histone-binding protein RBBP4
Organism
plop  Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03082  ATP-dependent chromatin remodeling
plop03083  Polycomb repressive complex
plop04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:plop00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    125362213
   03083 Polycomb repressive complex
    125362213
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    125362213
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:plop03036]
    125362213
Chromosome and associated proteins [BR:plop03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     125362213
  Histone modification proteins
   HAT complexes
    HATB complex
     125362213
   HDAC complexes
    Sin3A-HDAC complex
     125362213
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     125362213
    PRC2.2
     125362213
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     125362213
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    125362213
  Chromatin remodeling factors
   NuRD complex
    125362213
   NuRF complex
    125362213
   NuRF complex (fruit fly)
    125362213
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 CAF1C_H4-bd WD40_WDHD1_1st Beta-prop_EML Beta-prop_WDR75_1st EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd WD_LRWD1 Beta-prop_DCAF12 Beta-prop_WDR19_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_RIG_1st eIF2A Beta-prop_IFT140_1st MIOS_WD40 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 125362213
NCBI-ProteinID: XP_048216879
LinkDB
Position
13:complement(32538142..32539746)
AA seq 389 aa
MTHALEWPSLTAQWLLDVTRPEGKDFSIHCLVLGKHTSYEQNHLVIASVQLPNDDAQFDT
SHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRVRYMPQNPCIIATKIPSSDVLVFDYT
KHSSKPDPSGECNPDLRLCGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGK
VVAAKTIFTRHTAVVEDVSWHLLHEPLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAE
VNCLSFNPYSEFILATGSADKSVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNDTILAS
SGTDRRLNVWDLSKIGEEQSPEDAEDGPPELFIHSGHTAKISDFSWNPNEPWVICSVSED
NIMQVWQMAENIYNDEDPEGSVDPEGQGS
NT seq 1170 nt   +upstreamnt  +downstreamnt
atgacccatgccctggagtggcccagcctcactgcgcagtggcttctcgatgtgaccaga
cctgaagggaaagatttcagcattcattgccttgtcctggggaaacacacatcgtatgaa
cagaaccaccttgtgatagccagcgtacagctccccaatgatgatgcacaatttgacaca
tcacactatgacagtgagaaaggagaatttggaggttttggctctgttagtgggaaaatt
gaaatagaaatcaagattaaccatgaaggagaagtaaacagggtccgttacatgcctcaa
aatccttgcatcattgcaacaaagattccatccagtgatgttcttgtttttgactacaca
aaacattcttctaagccagacccttctggagagtgcaacccagacttacgtctctgtgga
catcagaaggaaggctatgggctttcttggaacccaaatctcagtgggcacttacttagt
gcttcagacgaccataccatctgcttatgggacatcagtgcagttccaaaggaaggaaaa
gtggtagctgcgaagaccatcttcacccggcatacagcagtagtagaagatgtgtcctgg
catctgcttcatgagcctctttttgggtcagttgctgatgatcagaaacttatgatttgg
gatactcgttcaaacaatacttccaagccaagccactcagttgatgctcacactgctgaa
gtgaactgcttatctttcaatccttatagtgagttcattcttgccacaggatcagctgac
aagagtgttgccttgtgggatctgagaaatctgaaacttaagttgcattcctttgaatca
cataaggatgaaatattccaggttcagtggtcccctcacaatgacactattttggcttct
agtggtactgatagaagactgaatgtctgggatttaagtaaaattggagaagaacaatcc
ccagaagatgcagaagatggcccaccagagttgtttattcatagtggtcacactgccaag
atatctgatttctcctggaatcccaatgaaccctgggtgatttgttctgtatcagaagat
aatatcatgcaggtgtggcaaatggcagagaacatttacaatgatgaagaccctgaagga
agtgtggatccagaaggacagggatcctag

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