Perognathus longimembris pacificus (Pacific pocket mouse): 125362633
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Entry
125362633 CDS
T08928
Symbol
Ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
plop03009
]
125362633 (Ighmbp2)
03012 Translation factors [BR:
plop03012
]
125362633 (Ighmbp2)
Enzymes [BR:
plop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125362633 (Ighmbp2)
5.6.2.5 RNA 5'-3' helicase
125362633 (Ighmbp2)
Ribosome biogenesis [BR:
plop03009
]
Eukaryotic type
Other ribosome biogenesis factors
125362633 (Ighmbp2)
Translation factors [BR:
plop03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125362633 (Ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
R3H
AAA_19
zf-AN1
Viral_helicase1
ResIII
AAA_16
nSTAND3
DEAD
AAA_22
Helicase_RecD
UvrD-helicase
SLFN-g3_helicase
AAA_25
IstB_IS21
PhoH
ABC_tran
Flavi_DEAD
AAA
Zot
AAA_31
ATPase
NPHP3_N
UvrD_C_2
AAA_18
DnaB_C
DAP3
AAA_5
SRP54
NTPase_1
Motif
Other DBs
NCBI-GeneID:
125362633
NCBI-ProteinID:
XP_048217404
LinkDB
All DBs
Position
13:60458280..60475572
Genome browser
AA seq
1049 aa
AA seq
DB search
MASAAVEDFVAKQLSLLGLERDAEVQERRAWQENSSLKELQSRGVCLLKLQVASQRTGLY
GQLLVTFEPGRCGSVPGLPSNSFTSGDIVGLYSTGNQDGQLATGVLTRVTPRSVTVAFDE
SQDFQLNLDPEASYRLLKLANDVTYKRLKNALLSLKKHHSGPASSLIEVLFGGAAPSPAS
EIPPLTFYNPELDASQKEAVSFALAQKEIAIIHGPPGTGKTTTVVEIILQAVKQGSKVLC
CAPSNVAVDNLVERLARRRLRVLRLGHPARLLESVQQHCLDAVLARSDGAQVVADIRRDM
DQVLLKNKKTQDKREKHNFRHEMKLLRKELKEREEAAMVESLTAASVVLATNTGASPDGP
LKLLPEGHFDLVVIDECAQALEASCWIPLLKASKCVLAGDHRQLPPTTVSHKAALAGLSL
SLMERLAQELGPAVVRMLTVQYRMHQAVMRWASEAMYRGQLTAHPSVAGHLLRDLPGVAD
TEETSVPLLLVDTAGCGLFELEEDDSQSRGNPGEVRLVSLHVQALVDAGVQAGDIAVIAP
YNLQVDLLRQSLTHRHPALEVKSVDGFQGREKEAVVLSFVRSNRRGEVGFLAEDRRINVA
VTRARRHVAVICDSHTVSSHAFLRTLVDYFVEHGAVRTAFEYLEDIVPENYAHEGSRGPG
RAAAPRPGSPTLLGRPPSRREARAAPRRAPGTPGARPPRPRGDEGRPGGPERLRAAIASF
LAGEETRLQFPASLSAHDRLRVHRLAEELGLRHDSAGEGAARRVTVSKRAPAPPPPPPRD
EPRDEPQREQGSQEQPATEEPPEEKEQPATEEPPEEKEQPEKKEQPAKEEPPEKKEQPAK
EEPPEKKEQPAKEEPPEKKEQPAKEEPPEKKEQPAKEEPPEKKEQPEKKEQPAKEEQPEK
EQPARKEQPQRPPQSRKKKKKEAKGPGGPALPAEEDLDALLSAVTKADNTCSFAKCAAGL
ATLGQLCQHCGRRYCLSHHLPEVHGCGEKARAHARQRLRREGLPGAGGGAKARPLDPARR
AQLQRRLDARLGELSGQRSSKKKEKERGT
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggcggcggtggaggacttcgtggccaagcagctgtccctgctgggcctcgag
agggacgcggaggtgcaggagcgcagggcctggcaggagaacagctccctgaaagagctc
cagagccggggtgtgtgtctgctgaagctgcaggtggccagccagcgcacagggctgtac
ggacagcttctggtcaccttcgagcccgggcggtgtgggtctgtgccaggccttcccagc
aacagcttcacttccggtgatatcgtgggtctgtatagcactgggaaccaggatggtcag
ctggccaccggcgtcctgacccgtgtcaccccgaggtcggtcaccgtggcctttgacgag
tctcaggacttccagttgaacctggacccagaagcttcctacagactgctaaagcttgcc
aacgatgtcacttacaagcgactcaagaatgcgctgctctctctgaagaagcaccactct
gggcccgcgtcctcgctcatcgaggttctgttcggcggagctgcccccagtcctgccagt
gaaatacccccgctgacgttctacaaccccgagctggatgcctcccagaaggaagccgtt
tcctttgcgttggcccagaaagaaattgccatcatccacggacctcctggcaccgggaag
accaccaccgtggtggaaataatcctccaagccgtgaagcagggctccaaggtcctgtgc
tgcgcgccctccaacgtggccgtggacaacctggtggagcggctggcgcgccggaggctg
cgcgtcctgcgcctcggccaccccgcccgcctcctggagtccgtccagcagcactgcctg
gacgccgtgctggcgcgcagcgacggcgcccaggtcgtcgccgacatcaggagggacatg
gaccaggtcctcctgaagaacaaaaagacccaggataagagggagaaacacaacttccgc
catgagatgaagctgttgaggaaagagctgaaggaaagggaagaagcagccatggtggag
agccttaccgcagccagcgtggtgctagcaaccaacaccggcgcgtctcccgacgggccc
ctgaagctgctgcccgagggccactttgacctggtggtcattgacgagtgcgcccaggcc
ctggaggccagctgctggatccccctgctgaaggccagcaagtgcgtcctggcgggcgac
caccggcagctgccgcccaccacggtctcccacaaggcggcgctggcggggctgtcgctc
agcctgatggagcgcctggcccaggagctcggcccggcggtggtgcggatgctcaccgtg
cagtaccgcatgcaccaggccgtcatgcgctgggcctcggaagccatgtaccgcgggcag
ctcacggcccacccctcggtggcgggacacctcctgagggacctgcccggcgtggcggac
acggaggagaccagcgtccccctgctgctggtggacactgccggctgcggcctgtttgag
ctggaggaggacgacagccagtcccgggggaacccgggtgaggtccgcctcgtctcgttg
cacgtccaggctctggtggacgccggtgtccaggcaggagacatcgcggtcatcgcaccc
tacaaccttcaggtggacctgctccgacagagcctcacgcaccggcaccccgcgctggag
gtcaagtccgtggacggcttccagggccgcgagaaggaggccgtggtcctctccttcgtc
aggtccaaccggagaggcgaggtcggcttcctggcggaggaccggcgcatcaacgtggcc
gtcacccgcgcccggcgccacgtggccgtcatctgcgactcgcacaccgtgagcagccac
gccttcctcaggaccctggtggattacttcgtggagcacggggcggtgcgcacggccttc
gagtacctggaggacatcgtccccgagaactacgcccacgagggctcgcggggtcccggc
cgcgccgccgccccccggcccgggagccccacgctcctcggcaggcccccgagccgccgc
gaggcccgggctgcgccccggcgggcgcccgggacgcccggcgcgaggcccccgcggccc
cgcggtgacgaggggcgtccgggcggccccgagcgcctgcgggccgccatcgcctcgttc
ctggccggcgaggagacgcggctgcagttccccgcgtcgctcagcgcccacgacaggctg
cgcgtccaccggctggccgaggagctggggctgcggcacgacagcgcgggggagggcgcg
gcgcggcgcgtcaccgtgagcaagagggcccccgccccgccgcccccgccgccccgggat
gagccccgggatgagccccagcgggagcagggcagccaggagcagccagccacggaggag
ccgccggaggagaaggagcagccagccacggaggagccgccggaggagaaggagcagcca
gagaagaaggagcagccagccaaggaggagccgccggagaagaaggagcagccagccaag
gaggagccgcccgagaagaaggagcagccagccaaggaggagccgcccgagaagaaggag
cagccagccaaggaggagccgcccgagaagaaggagcagccagccaaggaggagccgccc
gagaagaaggagcagccagagaagaaggagcagccagccaaggaggagcagccagagaag
gagcagccagccaggaaggagcagccccagagacctccgcagagcaggaagaagaagaag
aaggaggcaaagggacccgggggcccggccctgcccgccgaggaggacctggacgccctg
ctgtccgccgtgaccaaggccgacaacacctgcagctttgccaagtgtgcggccggcctc
gcgaccctgggccagctctgccagcactgcggccgccgctactgcctcagccaccacctg
cccgaggtccacggctgcggcgagaaggcccgggcacacgcccgccagaggctccgccgg
gaggggctccccggtgcgggcggcggggccaaggcccggcccctggaccccgccaggagg
gcccagctccagaggaggctggacgcgaggctgggcgagctcagcggtcagaggagcagc
aagaagaaggagaaggagagggggacgtga
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