Perognathus longimembris pacificus (Pacific pocket mouse): 125362736
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Entry
125362736 CDS
T08928
Symbol
Pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125362736 (Pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plop03021
]
125362736 (Pcf11)
03019 Messenger RNA biogenesis [BR:
plop03019
]
125362736 (Pcf11)
Transcription machinery [BR:
plop03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125362736 (Pcf11)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
125362736 (Pcf11)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
125362736
NCBI-ProteinID:
XP_048217606
LinkDB
All DBs
Position
13:6156973..6184066
Genome browser
AA seq
1685 aa
AA seq
DB search
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLSKSPEEPSAPGAAV
SSPSIATPPVVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETANLGPGSTPSKLHVSQIPPMAVKAPPHQVPVQPEKSRPGPSLPIQDLKGTNRDPRL
NRISQHSSHGKDQSHRKDFLVNTVNQSDTKTSKTVSSEKLNSSKQEKSKSGEKIAKKELD
QLDSKSKSKSKSPSPLKNKVSHTKDLKSQESESVRLSDMNKRDPRLKKHLQDKPDSKDDD
VKEKRKTAEKKDKDEHMKSSEHRLIGSRSKIINGIVQKQDTVIDELEKQGTKPGRSSTRK
RSRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPSSTPKAGKIRQSGVKQSHMEEFTPPS
REERNAKRSTKQDIRDPRRMKKTEEERPQETANQHSMKSGNEPKENLENWPSSKSAKRWK
SGWEENKSLQQGDEHSKSPHLRHRDSWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLA
SKRELIQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCSVRDSPTEENKGGLKKK
PLLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHAS
RNSGAQFDRKEQFSERARRLSPISGSRSYAENLSPHEGRRRHDEQVSAKGVREEQRSPFN
DRFPLKRPRYEDSDKPFVDSPASRFAGLDTNQRLTALAEDRPLFDGPSRPSVTRDGPAKM
IFEGPNKLSPRVDGPPTPGSLRFDGSPGQMGGGGPLRFEGPQGQIGGGCPLRFEGPPGPV
GTPLRFEGPIGQGGGGGFRFEGSPGLRFEGSAGGLRFEGPGGQPVGGLRFEGHRGQPVGG
LRFEGPHGQPVGGLRFDNPRGQPVGGLRFEGGHGPSGASMRFDGPHGQPGSGIRFEGPLL
QQGVGMRFEGPHGQSVAGLRFEGQHNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRF
EGPVPGGGLRIEGPLGQGGPRFEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQ
PGPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESFNQ
TGPYNDPPGGSFNAPSQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFD
EKNLQSSQFGNFGNLPAPISVGNIQGPQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFVQN
PSGALPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDAATAQVNEVAAQPPAEEEEDQN
EDQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNR
TEKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQ
SVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDC
TPSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEERIDTPPACTEESVTPATEIKTEND
TVESV
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagcagacgccggccgaggccggggctgctggggcccgggaggacgcctgtcgg
gattatcagtcgtcgctcgaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctagccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttcctgttatgtaccttatggattctatc
gtgaaaaatgttggaagagagtatctcactgcctttactaaaaatcttgttgcaacattt
atttgtgtttttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgctcc
acatgggatgagatattccctttgaagaaactttatgccctggatgtcagagtcaattca
ttagatcctgcttggcctattaagcctctaccccccaatgtgaacacatctagcatccat
gtgaatcccaagtttttaagcaaatcgcctgaggagccctcagcccctggcgccgcggtc
agttctcctagcatcgctactcctcccgtcgttcctgacatacaaaagaatcttactcaa
gaacagctaataaggcagcagttactggcaaagcaaaaacaattgttagaacttcagcag
aaaaagctggagcttgagttagagcaagctaaggcacaactggcagtttctcttagtgtt
cagcaggagacagctaacttgggtcctggatcaacaccatctaaattacatgtttctcaa
attccccctatggcagttaaagctcctccccatcaggttcctgttcaacctgagaaaagc
cgacccggtccgtccttaccaattcaggacttgaaaggaactaaccgggatccccgcctt
aacaggataagccaacattcttctcatggtaaagatcagagtcacaggaaagacttcctt
gtaaacacagtgaaccaatctgatactaagactagtaaaactgtatcctctgagaaactt
aattcatccaaacaagaaaaaagtaaatcaggtgaaaaaatagctaagaaagaacttgac
caattagattcaaaatcaaaatcaaaatcaaaatcaccatcacctttgaaaaacaaagtt
tctcacacaaaagacttgaaaagtcaagaatctgaaagtgtgaggttatctgatatgaac
aagagagatccaagattaaaaaaacatcttcaggataagcctgatagcaaagatgatgat
gtaaaagagaagagaaaaacggcagaaaaaaaggataaagatgagcacatgaaatcatct
gaacacagactaattggaagtagaagtaaaattataaatggcattgtacaaaaacaggac
acagtcatagatgaattggaaaaacaggggacaaaaccagggagatcaagtactcgaaaa
cgatcaagatctcgatcacccaagtctcgatcaccaattatacattccccaaagagaaga
gataggcggtcgcccaaacgaaggcagagaagtatgtctccaagttcgacacccaaagct
ggaaagattcgccagtcaggagttaagcagtcacatatggaagagtttacaccaccttcc
agggaggaaagaaatgctaagagaagtactaaacaggatattcgagatccaaggagaatg
aaaaagactgaagaagaaagaccacaagaaactgcaaatcaacattctatgaagtcaggc
aatgaaccaaaggagaatttagaaaattggccgagttccaagtctgctaagagatggaag
tctggttgggaagaaaataaaagcttacaacagggtgatgaacatagcaaatctcctcat
ttaaggcatagggacagctggtcaagcactaaaggaattttatcacctcgagctccaaag
cagcagcatcgattaagtgtagatgccaatcttcagattcctaaggagttaactcttgca
agcaaaagagagttaattcaaaagacgagtgaacgtttagcatctggtgaaattacacag
gatgagttccttgttgttgtgcatcaaattcgacaactatttcagtatcaagaaggtaaa
catagatgcagtgtacgggatagtcctacagaagaaaataaaggtggattaaaaaagaaa
cctctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggaca
caggttcagcattcatttccaagacttgatcttttagatcctgatatttttgactaccct
ttgactgatgccttgttgtctggaatagaatgtgagccatccaaaagtaaacatgcaagt
aggaatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctt
tctcctatatctgggagtcgttcttatgctgagaatctttcaccccatgagggccggaga
agacatgacgagcaagtctctgctaaaggtgttcgagaagagcagagatcaccattcaat
gaccgatttccacttaaacgacctagatatgaagattcagataaaccatttgtagacagc
ccagcgtcaagatttgctggccttgatacaaatcaacgacttacagctttagctgaagac
agaccattatttgatggacctagtaggccttcagtaacaagagatggcccagccaagatg
atttttgaaggacctaataaattaagccctagagttgatggacctcctacaccaggttct
cttcggtttgatgggtcaccaggacaaatggggggaggaggccctttgagatttgaagga
ccacaaggtcagataggaggtgggtgtcctttgagatttgaggggcctccaggaccagta
gggacacctctgcgatttgaagggccaattggtcaaggaggaggtggtggttttcggttt
gaaggttcccctggtctgaggtttgagggatctgcaggtggtttgcgatttgaaggacca
gggggtcagcctgtgggtggcctcaggtttgaaggacatcgtggtcagcctgtgggcggt
cttaggtttgagggacctcatggtcagcctgtgggtggtcttaggtttgataacccacga
ggtcagcccgtaggtggacttagatttgaagggggtcatggcccatcaggggcttctatg
aggtttgatggacctcatggtcagccaggaagtgggatcagatttgagggtcctttgtta
cagcagggagttggaatgaggtttgagggcccccatggtcagtctgtagctggcctgaga
tttgaaggacaacataatcagcttggtgggaaccttcggtttgagggtccacatggtcaa
ccaggggttgggatcagatttgaaggacctttagttcaacaaggaggtggcatgaggttt
gagggtcctgtaccaggaggtggcctgagaattgaagggcctctgggtcaaggtggtcca
agatttgaaggttgtcatgctttaaggtttgatgggcaaccaggtcagccatcacttttg
ccaagatttgatggattgcatggtcagccaggtcctagatttgaaagaactcctggtcag
ccaggcccgcagaggtttgatggaccacctggacagcaggttcaaccaagatttgatggt
gtaccacaaagatttgatggtccacaacaccagcaagcatcaaggtttgatattcctctt
ggtctacaaggcacacgatttgacaatcatccttcacaaaggcttgaatccttcaatcag
actggcccatataatgatccacctggcggttcttttaatgctccatcccaaggactacag
ttccagagacatgaacaaatatttgattcaccccaaggaccaaattttaatggaccacat
ggccctggaaaccagagtttctcaaatccccttaacagagcttctggacactattttgat
gaaaagaatcttcagagttctcagtttggaaactttggcaatttacccgctccaatatca
gtaggaaatattcaaggtcctcaacaggttctgactggtgtagctcagcctgtagcattt
ggccaaggacaacagtttttaccagttcatccacaaaatccaggagcatttgttcagaat
ccttcaggagctcttcctaaagcatatcctgataatcatctcagtcaggtggatgtaaat
gaattgttttcaaaactgctaaaaacaggaattctcaaactgtcccagcctgatgcagct
acagcacaagtaaatgaagttgctgctcagcctcctgctgaagaggaggaagatcaaaat
gaagatcaagatgttccagatcttactaattttacaattgaagaattgaaacaacgctat
gacagtgttataaaccgactgtacactggtattcagtgttactcctgtggaatgaggttt
acaacttcacagacagatgtatatgcagatcacttggattggcattatcggcaaaacaga
actgagaaagatgttagcagaaaagtcactcacagacgttggtactacagtttaacagac
tggatagaatttgaggaaatagctgacctggaagaacgtgcaaagagccagttttttgaa
aaggtgcatgaagaagttgtgctcaaaactcaggaggctgctaaagaaaaggagttccaa
agtgtgcctgctgggccagctggagcagttgagagttgtgaaatctgtcaagaacagttt
gaacagtattgggatgaagaggaagaggaatggcacttaaaaaatgctattagagtagat
ggaaagatttatcatccatcatgttatgaagattatcaaaatacatcttcatttgattgt
acaccatctcccagcaagacaccagttgaaaaccctttgaacattatgttgaacattgtc
aaaaacgaattgcaggaaccctgtgaaagtcccaaagttaaggaagaacgaattgacacc
ccaccagcttgtacagaggaaagtgtaacaccagccactgaaattaagacagaaaatgat
acagttgagtcagtttaa
DBGET
integrated database retrieval system
