Perognathus longimembris pacificus (Pacific pocket mouse): 125362857
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Entry
125362857 CDS
T08928
Symbol
Actn1
Name
(RefSeq) alpha-actinin-1 isoform X1
KO
K05699
actinin alpha 1/4
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04510
Focal adhesion
plop04520
Adherens junction
plop04530
Tight junction
plop04670
Leukocyte transendothelial migration
plop04810
Regulation of actin cytoskeleton
plop05146
Amoebiasis
plop05203
Viral carcinogenesis
plop05322
Systemic lupus erythematosus
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125362857 (Actn1)
04520 Adherens junction
125362857 (Actn1)
04530 Tight junction
125362857 (Actn1)
09142 Cell motility
04810 Regulation of actin cytoskeleton
125362857 (Actn1)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
125362857 (Actn1)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
125362857 (Actn1)
09174 Infectious disease: parasitic
05146 Amoebiasis
125362857 (Actn1)
09163 Immune disease
05322 Systemic lupus erythematosus
125362857 (Actn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125362857 (Actn1)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
plop04812
]
125362857 (Actn1)
04147 Exosome [BR:
plop04147
]
125362857 (Actn1)
Membrane trafficking [BR:
plop04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
125362857 (Actn1)
Cytoskeleton proteins [BR:
plop04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
125362857 (Actn1)
Exosome [BR:
plop04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125362857 (Actn1)
Exosomal proteins of colorectal cancer cells
125362857 (Actn1)
Exosomal proteins of bladder cancer cells
125362857 (Actn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
EFhand_Ca_insen
EF-hand_1
EF-hand_6
EF-hand_7
EF-hand_8
EF-hand_5
XisI
Motif
Other DBs
NCBI-GeneID:
125362857
NCBI-ProteinID:
XP_048217688
LinkDB
All DBs
Position
14:complement(36880789..36978485)
Genome browser
AA seq
892 aa
AA seq
DB search
MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR
DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV
KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC
ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT
YVSSFYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLASDLLEWIRRTIPWLENR
VPENTMHAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEGRM
VSDINNAWGCLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKASIHEAWTDGKEAMLRQK
DYETATLSEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKIC
DQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHT
IEEIQGLTTAHEQFKATLPDADKERLAILGIHNEVSKIVQTYHVNMAGTNPYTSIAPQEI
NGKWDHVRQLVPRRDQALTEEHARQQHNERLRKQFGAQANVIGPWIQTKMEEIGRISIEM
HGTLEDQLNHLRQYEKSIVNYKPKIDQLECDHQLIQEALIFDNKHTNYTMEHIRVGWEQL
LTTIARTINEVENQILTRDAKGISQEQMNEFRASFNHFDRDHSGTLGPEEFKACLISLGY
DIGNDPQGEAEFARIMSIVDPNRLGVVTFQAFIDFMSRETADTDTADQVMASFKILAGDK
NYITVDELRRELPPDQAEYCIARMAPYAGPDSVPGALDYMSFSTALYGESDL
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atggaccattatgattctcagcaaaccaacgactacatgcagcccgaagaggactgggac
cgggacctgcttctggatccggcctgggagaagcagcagcgaaagacattcacagcatgg
tgcaattcccacctccggaaggccggcactcagatcgagaacatagaggaggacttccgg
gatggcctgaagctcatgctgctgttggaggttatctcaggtgagcgcctggccaagcca
gaaagaggcaagatgcgggtacacaagatctccaatgtcaacaaggccctagatttcatc
gccagcaagggggtcaagctggtgtccattggagcggaagaaatcgtggacgggaacgtg
aaaatgaccctgggtatgatctggaccatcatccttcgctttgccatccaggacatctcc
gtagaagagacttctgccaaggaagggctgctcctgtggtgtcagaggaagacggcccct
tacaaaaatgtcaacatccagaacttccacatcagctggaaggatggccttggcttctgt
gccttgattcaccgacaccggccagaactgattgactatgggaagctgcggaaggacgat
ccactcacaaacctgaacacagcctttgatgtggcagagaagtacctggacatccccaag
atgctggacgctgaagacattgttggaaccgcccggccagatgagaaagccatcatgaca
tatgtgtccagcttctaccacgccttctctggagcccagaaggcggagaccgcagccaat
cgcatctgcaaggtgttggccgtcaaccaggagaatgaacagcttatggaagactatgag
aagctggccagcgatctgttggagtggatccgccgtaccattccatggctagaaaaccgc
gtgcccgagaacaccatgcacgccatgcagcagaagctggaggacttccgtgactaccgg
cgcctgcacaagccacccaaggtgcaggagaaatgtcagctggagatcaacttcaacaca
ctgcagaccaagctgcgcctcagcaaccgacctgccttcatgccctccgagggcaggatg
gtctcggacatcaacaatgcttggggctgcctggaacaggcggaaaagggctatgaggaa
tggcttctgaatgagatccggaggctggagcggctcgaccacttggcagagaagttccgg
cagaaggcctccatccacgaggcttggacagatggcaaagaggccatgctgcggcagaaa
gattatgagacggccaccctgtcagagatcaaggccctgctcaagaagcatgaggccttc
gagagtgacctagctgctcaccaagatcgcgtggagcagattgccgccatcgcacaggag
ctcaatgagctggactattacgactcacccagtgtcaacgctcgttgtcaaaagatctgt
gaccagtgggacaatctaggggccctgactcagaagcggagggaagctctagagcggaca
gagaagctgctggagaccattgaccagctgtacttggagtacgccaagcgggctgcaccc
ttcaacaactggatggaaggggccatggaagacctgcaggacactttcattgtgcatacc
attgaggagatccagggactgaccacagcccacgagcagttcaaggccaccctccctgat
gctgacaaggagcgcctggctatcttgggtatccacaatgaggtgtccaagattgtccag
acctatcatgtcaacatggcaggcaccaatccctacacaagcattgcacctcaggagatc
aatggcaaatgggaccatgttcggcagctggtgccccggagagaccaagctctgacggaa
gagcatgcccgccagcagcataatgagaggctacgcaaacagtttggagcccaggccaat
gtcattgggccctggatccagaccaaaatggaggagatcggcaggatctctattgagatg
cacgggaccttggaggaccagctcaatcacctgcggcagtacgagaagagcatcgtcaac
tacaagccaaagatcgaccaactggagtgcgaccaccagctgatccaggaggcgctcatc
ttcgacaacaagcacaccaactacaccatggagcacatccgcgtgggctgggagcagctg
ctcaccaccattgccaggaccatcaatgaggtggagaatcagatcttgacccgagatgcc
aaaggcatcagccaggagcagatgaatgagttccgggcctccttcaaccactttgaccgg
gatcactccggcacgctgggtcccgaggagttcaaagcctgcctcatcagcttgggttat
gatattggcaacgacccccagggagaggcagaatttgcccgcatcatgagcattgtggac
cccaaccgcctgggggtagtgacattccaagccttcattgacttcatgtcccgagagact
gctgacacagatactgcagatcaagtcatggcttccttcaagatcctggctggggacaag
aactacatcaccgtggatgaactgcgccgggagctgccgccggaccaggccgaatactgc
atcgctagaatggcaccctatgccggccccgactctgtgcccggtgctctggattacatg
tccttctccacggcgctgtacggcgagagtgacctctaa
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