KEGG   Perognathus longimembris pacificus (Pacific pocket mouse): 125362898
Entry
125362898         CDS       T08928                                 
Symbol
Aptx
Name
(RefSeq) aprataxin isoform X1
  KO
K10863  aprataxin [EC:3.6.1.70 3.6.1.71 3.6.1.72]
Organism
plop  Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:plop00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    125362898 (Aptx)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:plop03400]
    125362898 (Aptx)
Enzymes [BR:plop01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.1  In phosphorus-containing anhydrides
    3.6.1.70  guanosine-5'-diphospho-5'-[DNA] diphosphatase
     125362898 (Aptx)
    3.6.1.71  adenosine-5'-diphospho-5'-[DNA] diphosphatase
     125362898 (Aptx)
    3.6.1.72  DNA-3'-diphospho-5'-guanosine diphosphatase
     125362898 (Aptx)
DNA repair and recombination proteins [BR:plop03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     125362898 (Aptx)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Other NHEJ factors
     125362898 (Aptx)
SSDB
Motif
Pfam: DcpS_C FHA_2 zf-C2HE HIT FHA FtsK_SpoIIIE_N Glycoamylase zf-C2H2_4
Other DBs
NCBI-GeneID: 125362898
NCBI-ProteinID: XP_048217819
LinkDB
Position
1:complement(128825840..128842067)
AA seq 356 aa
MFLRQLLPRDLLVMMRVCWLVRQDSQQQRIKLPHLETVVIGRSPETKITDKKCSRQQVQL
KAECNKGYVRVKQVGVNPTSIDSVIIGKDQEMKLQPGQVLYMVNELYPYIVEFEEEAKGP
GLETHRKRKRSGHGNSIEGDVAQEAEPMTEQEHGTSNPSQYSLPPKKGKDASAKKESLGH
WSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWASISSLKAVTSEHLELLKH
MHAVGEKVISDFAGFNKHRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEY
FLESKAIIKMVQEAGKVTVQDGTSELLKLPLRCHECQQLLPSIPQLKEHLRKHWTK
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgtttttgcgtcaactccttcccagagacttgctagtgatgatgcgggtgtgctggttg
gtgagacaggacagccagcagcagcgaatcaaacttccacatttagaaacagttgtgatt
gggcgcagcccagagaccaagatcactgataaaaaatgttctcgacagcaagtacagttg
aaagcagagtgtaacaagggatatgtcagggtaaagcaggtaggggtcaatcctaccagc
attgactcagtcataattgggaaggaccaagagatgaagctgcagcctggccaggttctc
tatatggtgaatgaactttatccatatattgtagagtttgaggaagaagcaaagggccct
ggcctagaaacacacaggaagagaaagaggtcaggccacggcaattctatagaaggggat
gttgctcaggaagctgagcctatgacagagcaggaacatgggacctccaaccccagccaa
tattctctgcccccaaagaaggggaaagatgcatctgccaaaaaggaatcactgggccac
tggagtcaaggcttaaagatttctatgcaagaccctaaaatgcaggtttacaaagatgag
caggtggtggtgattaaggataaataccctaaggcccggtatcattggctggtcttgcca
tgggcctctatttccagtttgaaggctgtgaccagtgaacaccttgaacttctcaaacat
atgcatgctgtaggagaaaaggtgatatcagattttgctggatttaacaaacaccgtttc
cgactgggctatcatgccattcccagcatgagccatgtacaccttcatgtgatcagccag
gattttgattctccttgccttaaaaacaaaaaacactggaattctttcaatacagaatac
ttcctagaatcaaaagctataatcaagatggtacaagaggctggcaaggtgactgtccag
gatgggacgtctgagctcttgaagctgccccttcgatgtcatgagtgtcagcaactactg
ccttccattccacagctgaaagagcatctcaggaagcactggacaaagtga

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