Perognathus longimembris pacificus (Pacific pocket mouse): 125362973
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Entry
125362973 CDS
T08928
Symbol
Nrde2
Name
(RefSeq) nuclear exosome regulator NRDE2 isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125362973 (Nrde2)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
125362973 (Nrde2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
TPR_14
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_12
Motif
Other DBs
NCBI-GeneID:
125362973
NCBI-ProteinID:
XP_048217920
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All DBs
Position
14:complement(53000335..53032594)
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AA seq
1164 aa
AA seq
DB search
MALFPAFAGVREAAGGGGSRKELDWLNNPSFCVGTLTSLSQPSEEPTSPIPERSPLRSRS
PLKSESSDGSAHGRKLPQVSRKKKKEKKKKRKHHRKTKRKHGQSSSSESEPDTDLGKDRP
SWSLTGTQKESEKPSQGNTAAVGASPHCVWLEDVEALTGETFRVDKKPDPANWEYKSLYR
GDIARYKRKGDSCLGLNPKKQCISWEGASASKKHSHRVPERYFTKKNVGLLHADGVAVSC
NTELPSSEPVLFIPVKDSEEVAAPVTSWLNPLGIYDKSTSQWLQGLGPPEQEAKQPDSQV
DRESAVLKAKVEDFNRRVRENPHDTELWLAFVAFQDEAMKSPGLYALEDGEREKRKASLK
LLLEKKLAILERAIDSNQSSVDLKLARLRLCAEFWEPSVLVKEWQKLIFLHPNNTALWQK
YLVFCQSQFSTFSVSKIHGLYGKCLSTLSAVNDGSILSHPALPGTEEAMFALFLQQCHFL
RQAGHSEKAISLFQAMVDFTFFKPDSVRDLPTKAQVEFFEPFWDSGEPRAGEKGARGWRA
WMHQQERGGWVVITPDEDDDEPEEDDQEIKDKSLPRWQIWLAAERSRDQRHWRPWRPDKT
KKQTEEDCEDPERQVLFDDIGQSLIRLSSQALRFQLVEAFLQFLGVPSGFVPPASCLYLA
MDESSVFDSGLHDDKPLTAFDFAFSGLSCVGRMDPLGCRRWTRGHSREGEEFIRNVFHLV
MPLFSGRQKSHLCFSWLQYETAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENRNNF
CLWKQYAHLEWLLGNIEDARKVFDTALSMAGGSELKDRELCELSLLYAELEVEQPSDSRE
AATARAVHVLTQLTESSPSGPYTGPVLATRVLKARKAYEHALQGCLGENCVSDGAPADSL
DCLCSLVRCFMLFQYLTVGIDAAVRISEQVFAKLKDSVSREVPGLEDRGLSQSLRSVLEA
VSLMHTSLLRFHMTVSVYPRARLREALADALRRYPGNQLLWRSYVQTQSQSHAASKTRRF
FDAVARSASPLEPWLFAIEAEKRRRSLAETVQRVGGREIHATIPETGLTHRIRALFENAL
RSHHGSQCPLLWRMYLQFLVSLGNKERSKGVFYKALQHCPWAKVLYMDAMEYFPDELQEI
LDLMTEKELRVRMPMEELELLLED
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggcgctattcccggcctttgctggcgtcagggaggccgccggtggtggaggctcccgg
aaagaattagactggctgaacaacccaagcttttgtgtgggaaccttgacatcacttagc
caaccgtcagaagaacccacgagccctattcctgagcggtcacccctgagaagcaggagt
cctttgaagtctgagtcttcagatgggagtgcccatggccgaaagctcccacaagtaagc
aggaagaagaagaaggagaagaagaagaaaagaaagcaccataggaagacgaagaggaaa
cacgggcagtcgagcagcagtgagtctgagcccgacacagatttggggaaggaccggccg
tcctggagcctcacgggtactcagaaggaatctgagaaacccagccaaggaaatactgca
gctgttggtgccagccctcactgtgtatggctggaagacgtcgaggctctgacaggagaa
accttccgtgtggataagaagcctgatcctgcaaactgggagtataaaagtctctaccga
ggggatatagcaaggtacaagaggaaaggagactcctgtctgggccttaaccctaagaag
cagtgtatatcttgggaaggggcttcggcctcaaagaagcactcgcacagagtcccggaa
cgctacttcacgaagaagaacgtgggacttctgcacgccgatggcgtggcggtgagctgt
aacactgaacttccctcttcagagcccgtcttgttcatcccagtgaaggactcggaggaa
gtggctgcacctgttacaagctggttgaatcctctggggatttatgataagtcaacctcg
cagtggttgcaaggacttggtccccccgagcaagaagcgaaacagccagactcacaagta
gacagagagagtgcggttctcaaggccaaggtggaggactttaacaggagagtccgggag
aatcctcacgatactgagctgtggctggcgttcgtggctttccaggacgaggccatgaag
agccccggcctgtacgcgctggaggacggggagcgggagaagcggaaggcgtcgctgaag
ctcctcctggagaagaagctggccatcctggagcgggccatcgacagcaaccagagcagc
gtggacctgaagctcgccagactgaggctgtgcgccgagttctgggaaccctccgtgctg
gtcaaggagtggcagaaactgatcttcctgcaccccaacaatacagctctgtggcaaaaa
tatcttgtattttgccagagccagtttagcaccttctcagtatccaaaatccacggtctt
tatggcaagtgcttgagcactctctctgcagttaacgacggcagcatcttgtctcacccc
gcgctgcccggcacggaggaggccatgttcgccctctttctgcagcagtgccactttctg
cggcaggctggccactcggagaaggccatctctctgttccaggccatggttgactttacc
ttcttcaaacccgacagtgtaagagatctgccgactaaagcacaggtggagttctttgag
cccttctgggacagcggggagccccgggccggggagaagggcgcccggggctggcgggct
tggatgcaccagcaggagcggggtggctgggtggtcatcaccccagatgaggatgatgac
gagccggaagaggatgaccaggaaatcaaagataagagtctgccccggtggcagatctgg
cttgccgctgagcgctcccgggaccagaggcactggcgtccctggcgccccgacaagacc
aagaagcaaacggaggaggactgcgaggaccccgagagacaggtgctgttcgatgacatc
gggcagtctctgatcaggctctcgagccaggccctgcgcttccagctggttgaggccttc
ctgcagttcctgggtgtgccttcgggcttcgtcccgccggcctcctgcctgtacctggcc
atggacgagagcagcgtcttcgacagcgggctccatgacgacaagcccctgacagccttc
gactttgcgttctcgggcctcagctgcgtgggccgcatggacccgctgggctgtcgtcgg
tggacccgcggtcacagccgcgagggcgaggaattcatccgcaatgtcttccacctcgtg
atgcccttgttctcagggaggcagaagtctcacctgtgtttctcctggctgcagtatgag
acggcaaaggtcatttggtgtctgcacactaaaaacaagaagagattaaagtcacaaggg
aagaactgcaaaaaactagccaagaatctccttaaggagccagaaaacaggaacaatttt
tgcctctggaagcagtatgcccatctggagtggttgcttggcaacatagaggatgccagg
aaagtgttcgatacagcgctcagcatggcgggcggcagtgagctgaaggaccgggagctg
tgtgagctgagtctgctctacgctgagctagaggtggagcagccgtcagactccagagag
gccgccacggcccgggctgtgcatgtactgacccagctgaccgagagcagcccctcgggg
ccgtataccgggcctgtgttggccactcgtgtgttgaaagcgcggaaggcttacgagcat
gcgctgcagggctgtctgggggagaactgtgtctccgatggcgctcccgccgactccttg
gactgcctgtgtagcttggtcaggtgctttatgctcttccagtatctgaccgtggggatc
gatgcagcggtgaggatctctgagcaggtgttcgccaaactgaaggactctgtttctcgg
gaggtccctggcctggaggaccgcggcctctcccagagcttgcgcagcgtgctggaggcc
gtcagcctgatgcacacgagtctgctgcggttccacatgacggtgagcgtgtacccgcgg
gcccggcttcgagaggcgctcgcggacgccttgaggcgctatcctggcaaccagctgctt
tggaggtcctacgtccagactcaaagccagtcccacgcggccagcaagaccaggaggttc
ttcgacgcggtcgccaggtctgccagccccttggagccctggttgtttgccattgaagcg
gagaagcggaggaggagcctggcggagacagtgcagagggtgggcggcagagagatccac
gccaccattcccgagacggggctcacgcaccggatccgagcgctctttgaaaacgcgctg
cggagccaccacggcagccagtgccccctgctgtggaggatgtacttgcagttcctggtt
tccctaggaaacaaagaaagaagcaaaggcgtgttctacaaagcacttcagcactgccct
tgggcaaaggtgctgtacatggacgccatggaatacttccctgatgagctgcaggagatc
ctggacctgatgaccgagaaggagctccgagtgcgcatgcccatggaggagctggagctc
ctgctggaggactag
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