Perognathus longimembris pacificus (Pacific pocket mouse): 125363770
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Entry
125363770 CDS
T08928
Symbol
Cdh20
Name
(RefSeq) cadherin-20
KO
K06807
cadherin 20, type 2
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
plop04515
]
125363770 (Cdh20)
Cell adhesion molecules [BR:
plop04515
]
Cadherins
Major cadherins
125363770 (Cdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_CELSR2_9th
Cadherin_2
Cadherin_4
DUF5330
DUF5527
Wzy_C
Motif
Other DBs
NCBI-GeneID:
125363770
NCBI-ProteinID:
XP_048218969
LinkDB
All DBs
Position
15:49247072..49418676
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AA seq
798 aa
AA seq
DB search
MWTSGRMSNARSWLGLGLSLYFWGLMDLTTTVLSSTTPRDTLEELLSDKSQTHQRAKRSW
VWNQFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQR
LDREERAQYTLRAQALDRRTGRPMEPESEFIIKIQDINDNEPKFLDGPYVATVPEMSPVG
TSVIQVTATDADDPTYGNSARVVYSILQGQPYFSVDSKTGVIRTALTNMDREAKEYYEVI
IQAKDMGGQLGGLAGTTTVNITLSDVNDNPPRFPQKHYQMSVLESAPVSSTVGRVFAKDL
DEGINAEMKYTIVDGDGADAFDINTDPNFQVGIITVKKPLSFESKKSYTLKVEGANPHLE
MRFLNLGPFQDTTTVHISVEDVDEPPVFEPGFYFVEVPEDVAIGTTIQIISAKDPDVTNN
SIRYSIDRSSDPGRFFYVDITTGALMTARPLDREEYSWHNITVLAMEMNNPSQVGSVSVT
IKILDVNDNAPEFPRFYEAFVCENAKAGQLIQTVSAVDQDDPHNGQHFHYSLAPEAANNP
NFTVRDNQDNTARILTRRSGFRQQEQSVFYLPVLIADSGQPVLSSTGTLTIQVCSCDDEG
HVMSCSPEAYMLPVSLSRGALIAILACIFVLLVLVLLFLSTRRHRKRPYVLDDEENIHEN
VVRYDDEGGGEEDTEAFDIAALWKPREAQARPDARQDMLPEIQSLCRRVPQACAVGSSVH
GFVLAKLYEADADLWAPPFDSLQTYTFEGDGSEAGSLSSLQSAASDSEQSFDFLTDWGPR
FRKLAELYGASEGPAPVW
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgtggacttctggtagaatgagcaatgcaaggagctggcttggacttggcttgtccttg
tacttctggggactgatggaccttacgaccactgttctctccagcacaacaccacgagac
acactagaagagctcctgtccgacaagtcacagacgcatcagcgagccaagaggagctgg
gtttggaaccagttttttgttctggaagagtacactgggacagaccctttgtatgtcggc
aagcttcattcagatatggacaggggagatggatccatcaaatacatcctctcgggagaa
ggcgcaggcattgtatttaccattgatgacaccactggcgacatccatgccattcagagg
ctcgacagagaagagagagctcagtacactttaagggctcaagctctggacaggcggaca
ggccggccaatggagccagagtcagagttcatcatcaaaatccaagacatcaatgacaat
gagcccaagttcctagatggaccttatgttgccactgtgccagaaatgtcaccagtgggt
acctctgtcatccaggtgacagccacagatgccgatgacccaacctatggcaacagcgcc
cgggtagtatacagcattctccagggccagccctatttttctgtggactccaaaacaggt
gtgatcagaacagcacttaccaacatggacagagaagccaaagaatactatgaagtgatt
attcaagccaaggacatgggagggcagctcggaggattagctgggaccacgacggtcaac
atcactctctcagatgtcaatgataacccaccccgctttccccagaaacattatcagatg
agtgtgctggaatccgccccagtgagctccacagtggggagggtgtttgccaaggacttg
gatgaaggaatcaacgcagagatgaagtacactattgtggatggagatggtgcagatgcc
tttgatattaacacagatccaaatttccaagttggcatcataactgtaaagaagcccttg
agttttgaaagcaagaaaagctacactttaaaggtggagggagccaaccctcacctagag
atgcgttttctgaacctgggcccgtttcaggacacaaccacagtgcacatcagcgtggaa
gatgtagatgaacccccagtgtttgaacctggcttttattttgtggaagtacctgaggat
gtggcaattggaacaaccatacaaatcatttctgccaaggacccagatgtgaccaacaac
tcaatcaggtattccattgacagaagcagtgaccctgggagatttttctacgttgatatt
acaacaggtgccctgatgaccgcaagacccttagaccgggaagaatattcttggcataat
atcactgtccttgctatggaaatgaacaatccctcccaggtgggaagtgtttctgtcaca
atcaaaatcttagatgtgaatgacaatgctccagagttccccagattctatgaagctttt
gtctgtgagaatgccaaagctggacagctaatccagacagtcagtgctgtcgaccaggat
gacccacacaacgggcagcatttccactacagcttggctcctgaggctgctaacaaccca
aacttcactgtgcgggacaaccaagataacacggcccggattctaactaggaggtctggc
ttccggcagcaggagcagagtgtcttctacctgcctgtcctgatcgccgacagtgggcag
ccggtgctgagcagcacaggcacactgaccatccaggtctgcagctgtgacgacgagggc
cacgtcatgtcctgcagccccgaagcctacatgctccccgtcagtttgagcaggggtgca
ctcatcgccatcctggcctgcatctttgtcctcttagtgctggtgctgctcttcctgtcc
acgaggcggcaccggaagcggccgtacgtgctggacgacgaggagaacatccatgagaac
gtggtgcgctacgacgacgagggcggaggcgaggaggacacggaggccttcgacatcgcc
gccctgtggaagccgcgcgaggcgcaggcgcggccggacgcgcggcaggacatgctgccc
gagatccagagcctgtgccgccgcgtgccgcaggcctgcgccgtgggcagctcggtgcac
ggcttcgtgctggccaagctctacgaggccgacgcggacctgtgggcgccgcccttcgac
tctctgcagacctacacgttcgagggcgacggctccgaggccggctcgctcagctcgctg
cagtcggccgcctcggactcggagcagagcttcgacttcctcacggactgggggccccgc
ttccggaagctggcggagctctacggggcgtcggaggggccggcgcccgtgtggtga
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