KEGG   Perognathus longimembris pacificus (Pacific pocket mouse): 125363959
Entry
125363959         CDS       T08928                                 
Symbol
Seh1l
Name
(RefSeq) nucleoporin SEH1
  KO
K14299  nucleoporin SEH1
Organism
plop  Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03013  Nucleocytoplasmic transport
plop04150  mTOR signaling pathway
plop05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:plop00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    125363959 (Seh1l)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    125363959 (Seh1l)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    125363959 (Seh1l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:plop03019]
    125363959 (Seh1l)
   04131 Membrane trafficking [BR:plop04131]
    125363959 (Seh1l)
Messenger RNA biogenesis [BR:plop03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     125363959 (Seh1l)
Membrane trafficking [BR:plop04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    125363959 (Seh1l)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 WDR90_beta-prop_4th Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 WDR55 Beta-prop_EIPR1 Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_IFT122_1st
Other DBs
NCBI-GeneID: 125363959
NCBI-ProteinID: XP_048219254
LinkDB
Position
15:complement(9313330..9334922)
AA seq 360 aa
MFVARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVK
FAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSP
MIAVGSDDSSPNAMAKVQIFEYNENTRKYAKAETLMTVTDPVHDIAFAPNLGRSFHILAI
ATKDVRIFTLKPVRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDG
CVRLWKANYMDNWKCTGILKGNGSPVSGNSQQGTSTPSLGSNIPNLQNSLNGSSSGRKHS
NT seq 1083 nt   +upstreamnt  +downstreamnt
atgtttgtggcgcgcagcatcgcggcggaccacaaggatctcatccacgatgtctccttc
gacttccacgggaggcggatggccacctgctccagcgaccagagcgtcaaggtatgggat
aaaagtgaaagtggagattggcactgtactgctagctggaagacacacagtggatctgta
tggcgtgtgacatgggcccatcctgaatttggacaggttttggcttcctgttcttttgac
cgaacagctgctgtatgggaagaaatagtgggagaatcaaatgataagctgagaggacaa
agtcactgggttaagaggacaactctagtggatagcagaacatctgttacagatgtgaaa
tttgctccaaagcatatgggtcttatgttagcaacctgttcagctgatggcatagttaga
atatatgaggcaccagatgttatgaatctcagccagtggtctctgcagcatgagatctca
tgcaagctaagctgtagttgcatttcttggaatccttcaagctctcgtgctcattcccct
atgatagctgtaggaagtgatgatagtagtccaaatgcaatggccaaggttcagattttt
gaatacaatgaaaacaccaggaaatatgcaaaggctgaaacacttatgacagtcactgat
cctgttcatgatattgcctttgctccgaacctgggaagatctttccacattctagcaata
gccaccaaagatgtaagaatttttacactaaagcctgtgaggaaagaacttacttcctct
ggtggaccaacaaaatttgaaatccatatagtggctcagtttgataatcataattctcag
gtgtggcgagtgagttggaacataacaggaacagtactagcatcttccggagatgatggt
tgtgtcaggttgtggaaagcaaactatatggacaattggaagtgtactggtattttgaaa
ggtaatgggagcccagtcagtggaaattctcagcagggaacctcaactccttccttaggt
tcaaatattccaaatcttcaaaactcattaaatggatcttcttctggaagaaagcacagc
tga

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