KEGG   Perognathus longimembris pacificus (Pacific pocket mouse): 125364367
Entry
125364367         CDS       T08928                                 
Symbol
Helq
Name
(RefSeq) helicase POLQ-like isoform X1
  KO
K19178  POLQ-like helicase [EC:5.6.2.4]
Organism
plop  Perognathus longimembris pacificus (Pacific pocket mouse)
Brite
KEGG Orthology (KO) [BR:plop00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:plop03400]
    125364367 (Helq)
Enzymes [BR:plop01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     125364367 (Helq)
DNA repair and recombination proteins [BR:plop03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   Helicases
    125364367 (Helq)
SSDB
Motif
Pfam: POLQ_helical HTH_61 DEAD Helicase_C ResIII HHH_5 DUF4332 DNA_pol_lambd_f DUF3135 DGKD_4H
Other DBs
NCBI-GeneID: 125364367
NCBI-ProteinID: XP_048219794
LinkDB
Position
16:19318449..19358272
AA seq 1066 aa
MDEGVPRIRRRVSVRKRNRTSVPSPGASPAAPRSRPCDGEDEEDEEEDDEEERTAGRRRR
KPLGVPGAEPVDSEEDMFGDYDSFAENSFLAQMDDVEQKYMQLPEHRNHAADFATEELHS
ESIKNKLSIPTESNSTKYKTKTQHEHGVPVEPTNDLLYDMPSSQILFFENLWNSSNELDA
PSPIVRDRNVSSNNIVSEELPPGHTDQPQQNDEFSSKVRTSSDMSRRKSIKDHLKSAMTG
NATVQTAMFSKSKQLKETLLSEEINVAMKTIESSSYDLGPFYSLPSKVRDLYVQFRGIEK
LYEWQHTCLTLSSVQERKNLIYSLPTSGGKTLVAEILMLQELLCRQKDVLMILPYVAIVQ
EKISGLSSFGIELGFFVEEYAGSKGRFPPTKRREKKSLYIATIEKGHSLVNSLIETGRIG
NLGLIVVDELHMIGEGSRGAILEMTLAKILYTSKTTQIIGMSATLNNVEDLQKFLQAEYF
SSHFRPVELKEYLKINDTIYEVDNKAENGMTFSRLLNFKYSDTLKKMDPDHLVALVSEVI
PNYSCLVFCPTKKNCENVAEMLCKFLSKAHLKHREKEKCDVIKNLQNASNGNLCRVLKHT
IPYGIAYHHSGLTNEERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYVAKEF
LKRNQYKQMIGRAGRAGIDTTGESILIMQEKDKKQVLELISKPLENCYSHLVQEFNKGIQ
SLFLSLIGLKIATNLGDIYHFMNGTFFGVQQKILLKDKSLWEITVESLRYLTEKGLLQRD
TACRSEEEFQCNFHITKLGRASFKGTIDLAYCDILYRDLKRGLEGLVLESFLHLIYLTTP
YDLASQCEPNWMIYFRQFNQLTPAEQNLASLLGVSESFIGKKASGQNIRKKVDKDIVNRL
YLSLVLYTLLKDTNIWSVSEKFNMPRGYLQNLLTGAASFSSCVLHFCEELEEFWVYKALL
AELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYNAGYKTLMHLANANPEVLIKTIDHLSR
RQAKQIVSSAKMLLHEKAEALQEEVEELLRPPSDLAAGVAPSVEKE
NT seq 3201 nt   +upstreamnt  +downstreamnt
atggatgaaggtgtcccccgcatccggcggcgggtgtctgtccgcaagaggaaccgaact
agcgtaccgagccccggagcctcccccgccgcgccccggtcccggccgtgcgacggggag
gacgaggaggacgaggaggaggacgatgaggaggagaggacagccgggaggcgccggcgg
aaacccctgggtgtgccaggcgcggagccagtcgacagtgaagaggacatgtttggtgac
tatgatagttttgcagaaaactccttcttagcccaaatggatgatgtggaacagaaatac
atgcagcttcctgaacacaggaatcatgctgcagactttgccactgaagagcttcattca
gaaagcatcaaaaataaactcagcattccaaccgagagtaactctactaaatataaaact
aaaacccagcatgaacatggtgtccctgttgaacctaccaatgatcttttgtatgatatg
ccttcttctcaaattttattctttgaaaatttgtggaactcttcaaatgaattggatgct
ccatctcctatagtaagggataggaacgtatcctctaacaatatcgtgagtgaagaactg
ccccctggtcacacagatcaaccccagcaaaatgatgaattctcttcaaaagtcagaact
agctcggatatgagtaggaggaaaagtattaaagatcatctaaagagcgccatgactgga
aatgccacagtccaaaccgcaatgttttctaagagtaaacagctcaaagagactctccta
tctgaagaaattaatgttgctatgaaaacaatagaatcatcatcatatgatcttggccct
ttttattcactacccagcaaagtgagagacctttatgttcagttcagaggaattgagaaa
ttatatgaatggcaacatacttgcttaacactgagttctgtgcaagaaagaaaaaattta
atatattctttgccaactagtggtggaaaaactcttgtagctgagattttaatgctacaa
gaactactttgtcgtcaaaaagatgtcttaatgatccttccatatgtggcaattgtccaa
gaaaagatttctggtttgtcaagttttggtatagaacttggtttctttgttgaagaatat
gctggaagcaaaggaagatttcccccaaccaaaagaagagaaaagaaatccctatatatt
gcgactattgagaaaggtcatagcctggtgaactccttgattgaaactggaaggattggt
aatttgggcctcattgttgtagatgagttgcacatgattggtgaagggagtcgtggtgcc
attctggaaatgaccctagcaaaaatcctctatactagcaaaacaactcagattattggt
atgagtgcaacattaaacaatgttgaagatttacagaagttccttcaagcagaatatttc
agcagtcactttagaccagttgaattaaaagaatatctgaaaataaatgatacaatatat
gaggttgacaacaaagctgagaatggtatgactttttcacggcttcttaattttaagtat
tcggataccctcaaaaagatggatcctgatcacttggtagcattggtgtcagaagttatt
cccaattattcctgcttagttttttgtcccacaaagaagaattgtgaaaatgtagcagaa
atgttatgcaaatttttaagcaaggcacatctgaagcacagggagaaagaaaaatgtgat
gtgattaagaacttgcagaatgccagcaatggcaatctgtgtcgcgtcttaaagcacact
atcccgtatggaattgcgtaccaccacagtggcctaacaaacgaggagaggaagcttctg
gaggaggcctactccactggggttctctgcctcttcacctgcacgtccaccctggccgca
ggggtcaacctgcccgctcgcagagttattttacgagctccctatgttgctaaggaattt
ttaaagaggaatcaatataagcagatgattggcagagctggtcgtgctggaatagatact
actggggagagcatccttataatgcaagaaaaagacaagaagcaggtcttagaattaata
agcaagccactggaaaactgttatagccatcttgttcaagaattcaacaagggaatccaa
agtttgtttctctctttgattggtttaaagattgcaacaaatctcggtgacatatatcat
tttatgaatggcacattttttggtgttcagcagaagattttattgaaagacaaaagtctc
tgggaaataactgttgaatcacttagatacctgacagagaaaggacttctacaaagagac
actgcttgtaggtctgaagaagagtttcaatgcaattttcatattacaaaattgggaaga
gcttcttttaaaggaactatagacttggcttattgtgacattctctatagagatttgaag
agaggccttgaaggccttgtgcttgaaagcttccttcatctgatctacctaacaactccc
tatgacctggcttcccagtgtgaaccaaattggatgatatacttcaggcagtttaatcaa
ctcactcctgcagaacaaaatttagcttctcttcttggggtctctgaaagctttattggg
aagaaagcatcaggccaaaacatcaggaagaaggtggacaaggatattgtcaacagactc
tacctgtcattagttctttataccttgctcaaggacactaacatttggagtgtgtctgag
aagtttaatatgcctcgaggatacttacaaaacctgcttactggagctgcctcattctcc
tcctgtgtcttacacttctgtgaggaacttgaagagttttgggtttataaagcccttctg
gcagaacttaccaagaagctgacatattgcgtaaaggcagagttaatccctctcatggaa
gtgactggagtcttagagggtcgagcaaaacagctgtacaatgcaggttacaaaactcta
atgcacttagctaatgcaaatccagaagtattaataaagaccattgatcatttatcaagg
cgccaggctaagcaaattgtttcatcagcaaagatgctgttgcatgaaaaggctgaggct
ttgcaagaagaagtagaggaattactgaggccgccctctgacctcgctgcgggtgtggcc
ccatctgttgaaaaggaatga

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