Perognathus longimembris pacificus (Pacific pocket mouse): 125364544
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Entry
125364544 CDS
T08928
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 2-like
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125364544
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
plop01002
]
125364544
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plop03021
]
125364544
03036 Chromosome and associated proteins [BR:
plop03036
]
125364544
Peptidases and inhibitors [BR:
plop01002
]
Metallo peptidases
Family M1
125364544
Transcription machinery [BR:
plop03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125364544
Coactivators
SAGA/TFTC/STAGA complex
125364544
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
125364544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1_N
HEAT_2
Peptidase_M1
DNApol3-delta_C
Motif
Other DBs
NCBI-GeneID:
125364544
NCBI-ProteinID:
XP_048220092
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All DBs
Position
16:55042010..55045419
Genome browser
AA seq
1100 aa
AA seq
DB search
MAGSGSGLKESSGCGAGLLGWWRNEEQVDPGLRAPRGRLGPLSSLKPSNRNRKVGDQAFK
SPRPYKLTHQLLCIDNLNFERKSVVGFVELTVLPTVANLHRITLNSKQCRIARICINDLE
AAFSYKDPTLEVCHSESKRRDLNSFSHTYAAAVTAVDPEVGNGELCIKVPSELWEDVAQL
KALKIHITFLLDQPKGGLHFVVPRVEGTMAERGAHVFSCGYQNSTRCWFPCVDSSSELCT
WKLEFTVDATMVAVSNGDLVETVYSHGMRKKTFHYMLTTPTAASNISLAVGPFEILEDPH
MRDVTHFCLPPLLPLLKHTTSSLHQVFEFYEDVLSCRYPYSCFKTVFVDEAYVEVAAYAS
MSIFSTNLLHSARIIDETPLTRRCLAQSVAQQFFGCFLARMSWSDEWVLKGISGYLYGLW
VRNTFGFNEYRHWIKEELDKVVAYELKTGGVLLHPLLHGGTEKDNPAPHLHFSIKHPHTL
SWEYYAIFQRKAHLVMRLIEDRIGMEFMLQVFHKLLSLAKAASAQKFHSHRWRRMLLSTS
GFLKSISNVSGKNIQPLIKRWVDQSGVVKFYGTFAFNRRRNVLELEIKQDYTSPGTQKYV
GPLQVTVQELDGSFSHTLQIEENSLKHDIPCHSQSRRHKKRKIPLPNGEEVDMDLSAMEA
DSPLLWIRIDPDMSLLRKVEFKQSDFMWQYQLLYARDVVAQQDSILALEKFPTPMSRLAL
TDILEQEQCFYRVRMSACFCLAKIANSMGSIWTGPPAMKSLFTRMFCCKTCPNIVRTNNF
RNFQSYFLQKTMPVAMALLRDVHNLCPKEVFTFLLDLIKYNDNRKNQFSDNYYRAELIAA
LANSVTPAVSFPLSTGQNLNPDVQLILEEITRCLNMEKLLPSYRYTITVSCLRAIRVLQK
NGHVPSDPALFKSYAEYGHFVDIRLAALEALIDYTKVDRNYEVLQWLLTMVQNDPVPYVK
HKILRMLTENPPFTKTMASPLGNEALVDQLWKLMNSGTSHDWRLRCDAVDLYFTLFGLGR
PSPLPLPELGISSSSKEKEAVLNPTIIPEVQIGVQSPFXFSEDEIDMDTVHESQDFISYH
LNVLERPSTPGLRKYGPASS
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atggcagggtccggatctgggctcaaggagagttccggctgtggggcaggactgctgggt
tggtggaggaacgaggagcaggtggacccaggactccgagctccacggggccgcctcgga
ccgctgtcaagtctaaaaccttccaacaggaacaggaaggtgggggaccaggccttcaag
agcccacggccttataagttaacccaccagctcctctgcatcgacaacctaaactttgag
agaaaatctgttgtggggtttgtagaactgactgtattgcctacagttgcaaacttacac
agaatcaccttgaacagcaagcagtgtagaatagcccgaatatgcatcaatgatttagag
gctgcttttagttacaaagatccaaccttggaagtttgccacagtgaatcaaaacggcga
gatctcaattcgttttctcatacttatgcggctgccgttactgctgttgatcccgaagta
ggaaacggagaactttgcattaaggttccatcggagctgtgggaagacgttgcccagtta
aaggccctgaagatacacattacttttttgttggatcagcccaaaggaggtcttcatttt
gtggtacccagggtggagggcactatggcagagagaggagctcatgtcttctcttgtggc
tatcaaaattccacaaggtgttggttcccgtgcgttgattcatcctcggaactgtgtaca
tggaaactggaatttacagtagatgctaccatggtggcagtgtccaatggagatctggta
gagacagtatatagccacggtatgaggaagaagaccttccactatatgcttacaactcct
acagcagcctcaaatatctccttggccgttggaccttttgaaatactcgaagatccacac
atgcgtgacgtgactcatttttgtttacctccacttcttccattgcttaagcataccaca
tcttcccttcatcaagtgtttgagttttatgaagacgttctttcgtgtcgctacccctac
tcctgttttaagacggtgttcgttgatgaggcttacgtggaagtggcggcctacgcttcc
atgagtattttcagcaccaatctcctccacagtgccaggattatagatgagacgcctctg
actaggaggtgcttagcccagtccgtggcccagcaattttttggatgttttctagccaga
atgtcttggtccgatgagtgggtgctgaaaggaatttcgggctacctttacggactttgg
gtgagaaacacttttggttttaatgaataccgccattggattaaggaggagctagataaa
gtcgtggcctacgagctgaaaaccgggggggttctactacatcctctacttcatggagga
acagagaaggataacccagcaccccacctacacttttcgataaagcacccgcacactctg
tcctgggagtactatgctatatttcagcgtaaagctcacctggtgatgagattgattgaa
gataggatcgggatggaatttatgctacaggttttccataaactgttaagcctggccaag
gctgcttcagctcagaagttccattctcacaggtggaggcggatgttgctttccacatct
ggatttttgaaatccatttccaatgtctctggcaaaaatatccagcccttaataaagcga
tgggtagaccagagtggagtagtaaaattttatggaacttttgcgtttaatagaagacgc
aacgtcttagaactggaaataaaacaagattatacatcccctgggacccagaaatacgtg
ggaccacttcaagtgacagtacaggagttagatggatcttttagtcatacgctgcagatc
gaagagaacagcctgaaacatgacatcccttgccattcccaaagcagaaggcataagaag
agaaaaatcccactgccgaatggggaagaagtggacatggatctttctgccatggaggca
gattctcctttgctatggataagaatagacccagatatgtcactgctgaggaaggtcgag
ttcaagcaatccgattttatgtggcaatatcaactcctgtatgcaagggatgtggtcgct
cagcaggactccatcttggccttggagaagtttcctacacccatgtcccgcctcgcactc
actgacatcttagaacaagagcagtgtttctaccgggtgagaatgtcagcttgcttctgt
ctggccaagattgcaaattcgatggggagcatatggacgggaccaccggcaatgaaatca
ctctttaccaggatgttctgttgtaaaacttgcccaaacattgtgagaacaaacaacttc
aggaacttccaaagttattttctacaaaagactatgccagttgcaatggctttgttaaga
gacgttcacaacctctgtcccaaagaagtcttcacattccttttagatctaatcaagtac
aatgacaacagaaaaaatcagttttccgataactattaccgtgcagaactgattgctgct
ctggccaactctgttacccctgcagtcagttttccccttagcacagggcagaacttaaat
cctgacgtgcaactcattctggaggaaatcaccaggtgcttgaatatggaaaaactactt
ccaagttacagatataccatcactgtcagttgcttgagagccataagggtgcttcagaag
aacggacatgtgcccagtgacccagccctttttaagtcttatgccgaatatggccatttt
gtggacatcaggctagcggctttggaagccctcattgactatactaaagtagacaggaac
tatgaagtactgcagtggctgcttactatggtccagaacgatcctgtaccctacgtaaag
cataagatcctccgcatgttgactgagaacccaccatttaccaagaccatggcgtctccc
ttaggcaatgaagccctggtagatcaactttggaaacttatgaattcgggtacttcccat
gactggaggttacggtgcgacgctgtggacttgtatttcacactttttggtctcggtaga
ccttcccctttacccttgccagagcttgggatcagttcttcatcaaaagaaaaagaagct
gtgttgaatcctaccataattccagaggtgcaaattggagttcagagcccattttgattt
tccgaagatgagattgatatggatactgttcatgagagccaggacttcatttcctatcat
ctgaacgtgcttgaaaggccatcaactccagggctccggaaatatggaccagctagctcc
tga
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