Perognathus longimembris pacificus (Pacific pocket mouse): 125364634
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Entry
125364634 CDS
T08928
Name
(RefSeq) high mobility group protein B1-like
KO
K10802
high mobility group protein B1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03410
Base excision repair
plop04140
Autophagy - animal
plop04217
Necroptosis
plop04613
Neutrophil extracellular trap formation
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
125364634
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
125364634
09143 Cell growth and death
04217 Necroptosis
125364634
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
125364634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
plop03036
]
125364634
03400 DNA repair and recombination proteins [BR:
plop03400
]
125364634
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
plop04147
]
125364634
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
125364634
DNA repair and recombination proteins [BR:
plop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
125364634
MMR (mismatch excision repair)
Other MMR factors
125364634
Exosome [BR:
plop04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
125364634
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
RNA_pol_3_Rpc31
NOA36
HMG_box_5
Nop14
Motif
Other DBs
NCBI-GeneID:
125364634
NCBI-ProteinID:
XP_048220194
LinkDB
All DBs
Position
16:25851666..25852576
Genome browser
AA seq
215 aa
AA seq
DB search
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
EDMAKADKARYEREMKTYIPPNGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEK
SKKKKEEEEDEEDEEDEEEEEDEEDEDEDEEDDDE
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattctttgtg
caaacttgccgggaggagcacaagaagaagcacccggatgcctccgtcaacttctcagag
ttttctaagaagtgctcagagaggtggaagaccatgtctgctaaagagaaagggaaattt
gaagacatggccaaggcggacaaggctcgttatgaaagagaaatgaaaacctacatcccc
cctaacggggaaacaaaaaagaagttcaaggatcccaatgcgcccaagaggcctccttcg
gccttcttcttgttctgttctgagtatcgccctaaaatcaaaggggaacaccccggcctg
tctattggtgatgttgcgaaaaaactgggagagatgtggaacaacactgctgcagatgac
aagcagccttatgaaaagaaggctgctaagctgaaggagaaatatgaaaaggatattgct
gcctatcgagctaaaggaaaacctgatgcagccaaaaagggggttgtgaaggctgaaaag
agcaagaaaaagaaggaagaggaggaagatgaggaagatgaagaagatgaggaagaagag
gaagacgaagaggatgaggatgaagatgaagaggatgatgatgaataa
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integrated database retrieval system
