Perognathus longimembris pacificus (Pacific pocket mouse): 125364906
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Entry
125364906 CDS
T08928
Symbol
Smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03082
ATP-dependent chromatin remodeling
plop04714
Thermogenesis
plop05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125364906 (Smarcd1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
125364906 (Smarcd1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
125364906 (Smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
plop03021
]
125364906 (Smarcd1)
03036 Chromosome and associated proteins [BR:
plop03036
]
125364906 (Smarcd1)
Transcription machinery [BR:
plop03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125364906 (Smarcd1)
Chromosome and associated proteins [BR:
plop03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125364906 (Smarcd1)
PBAF complex
125364906 (Smarcd1)
GBAF(ncBAF) complex
125364906 (Smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
DivIC
Motif
Other DBs
NCBI-GeneID:
125364906
NCBI-ProteinID:
XP_048220642
LinkDB
All DBs
Position
1:complement(54114758..54129647)
Genome browser
AA seq
515 aa
AA seq
DB search
MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE
FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggcggcccgggcgggtttccagtctgtggcaccgagcggcggggccggagcctcagga
ggggcgggcgcggcagctgctctgggcccgggcggaactcccgggcctcccgtgagaatg
ggtccggcgccgggtcaagggctgtaccgttccccgatgcccggggcggcctatccgaga
ccaggtatgctaccaggcagccgaatgacacctcagggaccttccatgggacctcctggc
tatggggggaacccttcagtccgacctggcctggctcagtcagggatggaccagtcccgc
aagagacctgcacctcagcagatccagcaggtccagcagcaggcggtccaaaatcgaaac
cacaatgcaaagaaaaagaagatggctgacaaaattctacctcaaaggattcgtgaactg
gtaccagaatcccaggcctatatggacctcttggcttttgaaaggaaactggaccagact
atcatgaggaaacggctagatatccaggaggccttgaaacgtcctattaagcaaaaacgg
aagcttcgtattttcatttctaacactttcaatccggccaagtcagatgccgaggacggg
gaagggaccgtggcttcctgggaacttcgggtagaaggacggctcctggaggattcagcc
ttgtccaaatatgatgccaccaaacaaaagaggaaattttcttccttttttaagtccttg
gtgatcgaattagacaaagacctgtatggaccagacaaccatctggtagaatggcacagg
accgccactacccaggagactgatggcttccaggtgaagcggccaggagatgtgaatgta
cggtgtactgtcctgctgatgctggattaccagcctccccagtttaaattagaccctcgc
ctggctcggctcctgggcatccatacccagactcgtccagtgatcatccaagcactctgg
cagtatatcaagacacataagctccaggaccctcacgaacgagaatttgtcatctgtgac
aagtacctccaacagatcttcgaatctcaacgtatgaagttttcagagatccctcaacgg
ctccatgccttgcttatgccaccagaacccatcatcattaaccatgtcatcagtgttgac
ccaaatgaccagaaaaagacagcttgctatgatattgatgtggaagtagatgataccttg
aagacccagatgaattcttttctgctgtccactgccagccaacaggagatcgctactcta
gacaacaagatccatgagacaatagaaactatcaaccagctgaagacccagcgggagttc
atgctgagctttgccagagaccctcagggtttcatcaatgactggcttcagtcccagtgc
cgggacctcaagaccatgactgatgtggtgggtaacccagaggaggagcgccgcgctgaa
ttctacttccagccttgggctcaggaagctgtatgccgatacttctactccaaggtgcag
cagagacgacaagaattagagcaagccttgggaatccggaatacctag
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