Perognathus longimembris pacificus (Pacific pocket mouse): 125364962
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Entry
125364962 CDS
T08928
Symbol
Fip1l1
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125364962 (Fip1l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125364962 (Fip1l1)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
125364962 (Fip1l1)
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Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
125364962
NCBI-ProteinID:
XP_048220747
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Position
16:27000670..27065687
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AA seq
604 aa
AA seq
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MSAGEVERLVSELSGGTGGDEEEEWLYGGPWDVHVHSDLAKDLDENEVERPEEENASANP
PSGIEDEATENGVPKPKVTETEDDSDSDSDDDEDDVHVTIGDIKTGAPQYGSYGTAPVNL
NIKTGGRVYGTTGTKVKGVDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGF
NEDTWKAYCEKQKRIRMGLEVIPVTSTTNKITAEDCTMEVTPGAEIQDGRFNLFKVQQGR
TGNSEKETALPSTKAEFTSPPSLFKTGLPPSSRNSTSSQSQTSTASRKANSSVGKWQDRY
GRAESPDLRRLPGAIDVIGQTITISRVEGRRRANENSNIQVLSERSATEVDNNFSKPPPF
FPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGIPITVPPPGFPPPPGAPPPSLIPTIES
GHSSGYDGRSARAFPYGNVAFPHLTGSAPSWPSLVDTTKQWDYYARREKDRDRERDRDRE
RDRDRDRERERTRERERERDHSPTPSVFNSDEERYRYREYAERGYERHRASREKEERHRE
RRHREKEETRHKSSRSNSRRRHESEEGDSHRRHKHKKSKRSKEGKEAGSEPAPEQESTEA
APAE
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccggcgaggtcgagcgcctagtgtcggagctgagcggcgggaccggaggggat
gaggaggaagagtggctgtatggcggcccatgggacgtgcatgtgcacagtgatttggca
aaggacctagatgaaaatgaagttgaaaggccagaagaagaaaatgccagtgctaatcct
ccttctggaattgaagatgaagccactgaaaatggcgtaccaaaaccgaaagtgaccgag
actgaagatgatagtgatagtgacagtgatgatgatgaagatgatgttcatgtcactata
ggagatattaaaacaggcgcaccacagtatgggagttatggtacagcgcctgtaaatctt
aacattaagaccgggggaagagtttatgggactacaggaacaaaagtcaaaggggtagat
cttgatgcacctggaagtattaatggagttccactcttggaggtagatttggattctttt
gaagataagccatggcgtaaacctggtgctgatctttctgattattttaattatgggttt
aatgaagatacttggaaagcttactgtgaaaaacaaaagaggatacgaatgggacttgaa
gttataccagttacttctactacgaataaaattacggccgaagactgtactatggaagtt
acaccaggtgcagagatccaagatggcagattcaatctttttaaggtacagcaggggaga
acaggaaattcggagaaagaaacagcacttccctctacaaaagctgaatttacttctcct
ccatccttgtttaagactggactcccaccaagcagcagaaacagcacctcttctcagtct
cagacaagtactgcctccagaaaagccaattcaagtgttgggaagtggcaggatcgttat
ggaagggcggaatctcctgatctaaggagattacctggagcaatcgatgtaattggtcaa
actataactattagtcgagtagaaggaaggcgacgcgcaaatgaaaacagcaatatacag
gtcctttctgaaagatctgctactgaagtagacaacaattttagcaaaccacctccattt
ttccctccaggagctcctcctacccatcttcctccacccccctttcttccacctcctcca
actgtcagcaccgctccacctctgatcccaccaccaggtattccaataactgtaccacct
ccaggttttcctcctccaccaggcgctccaccaccatctcttataccaacaatagaaagt
gggcattcttctggttatgatggtcgttctgcacgtgcatttccatatggtaatgttgcc
tttccccaccttactggttctgctccttcatggcctagtcttgtggataccaccaagcag
tgggactattatgcaagaagagagaaagaccgagatagagaaagagacagagacagagaa
cgagatcgtgatcgggacagagaacgggaacggaccagagaaagagagagggaacgtgat
cacagtcccacacccagtgtcttcaacagtgatgaggagcgatacagatacagggaatat
gcagaaagaggctatgagcgtcacagagcaagtcgagagaaagaagaacggcatagagaa
cgacgacaccgagagaaagaagaaaccagacacaagtcatcccgcagcaatagcagacgt
cgccatgaaagtgaagaaggagacagtcacaggagacacaagcacaaaaaatctaaaaga
agcaaagaaggaaaggaagctggcagtgagcctgctcctgaacaagagagcaccgaagct
gcacctgcggaatag
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