Perognathus longimembris pacificus (Pacific pocket mouse): 125365042
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Entry
125365042 CDS
T08928
Symbol
Cnot6l
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125365042 (Cnot6l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
plop03019
]
125365042 (Cnot6l)
Enzymes [BR:
plop01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
125365042 (Cnot6l)
Messenger RNA biogenesis [BR:
plop03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125365042 (Cnot6l)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125365042 (Cnot6l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
125365042
NCBI-ProteinID:
XP_048220855
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All DBs
Position
16:23877991..23963941
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AA seq
555 aa
AA seq
DB search
MRLIGMPKEKYDPPDPRRIYTIMSAEEVANGKKSHWAELEISGKVRSLSTSLWSLTHLTA
LHLNDNNLTRIPPDIAKLHNLVYLDLSSNKLRSLPAELGNMVSLRELLLNHNQLRVLPYE
LGRLFQLQTLGLTGNPLSQDIANLYQDPDGTRKLLNFMLDNLAVHPEQLPPRPWIALKER
DQILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQE
VETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTV
EFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAH
MHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDSGVV
EYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMPYTNY
TFDFKGVIDYIFYSKTHMNVLGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQLELHP
ALLPLVNGVHLPNRR
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgagactaatagggatgccaaaggaaaaatatgatcctccagatcctcgcagaatttat
accatcatgtcagcagaggaggtagccaatgggaaaaaatctcactgggcagaattagaa
atctcgggtaaagtgcggagcttaagtacatcactttggtcattgacacacttgacagcg
ctacaccttaatgacaataaccttactcgcattccacctgatattgccaagcttcataat
ctggtttacctggatctgtcatccaataaactcagaagtttaccagcagaactaggaaac
atggtgtctctcagggaattgcttttaaatcacaatcagttacgggttttgccttatgaa
cttggtcggctcttccagctgcaaactctaggtttgacaggcaatcctttatcacaggat
attgccaatttataccaggacccagatggaacccgaaagctgctgaacttcatgcttgac
aatcttgcagttcatccagagcagcttcctccgaggccatggattgcattaaaagaacga
gaccaaattctgccatcagcatcattcacggttatgtgttacaatgttttatgtgataaa
tacgctacccggcagctatatggctattgcccatcctgggcattaaactgggaatacagg
aaaaagggaattatggaagaaattgttaactgcgatgcagatatcattagtcttcaggaa
gtggaaacagagcaatacttcacactctttctgccagcgttgaaggagcgtggatatgat
ggatttttttctccaaagtcacgtgccaaaatcatgtctgagcaggagagaaagcatgtg
gacggctgtgcaatattcttcaaaacagaaaaatttacattggtgcagaagcatacagtg
gaatttaaccaagtggcaatggctaattcagatggatctgaagctatgttgaaccgagtg
atgacaaaagataacattggtgtcgctgtggtgttagaggtccacaaagaactatttgga
gcaggtatgaagcctattcatgctgcagacaaacagctgcttatagtggcaaatgcccac
atgcattgggacccagagtattctgatgtgaaacttatccagaccatgatgtttgtctca
gaggtcaaaaacattctggaaaaagcctcaagtagacctggcagcccaactgcagatcct
aattccatcccgctggtgctatgtgcagatcttaactcattgccagattcaggtgttgtg
gaatatttaagcaatggaggagtagctgacaaccataaagacttcaaggaactaaggtat
aatgagtgtcttatgaacttcagctgcaatggaaagaatggaagctcagaagggagaatc
acacatggcttccaacttaagagcgcctatgaaaataacttgatgccttacaccaattac
acctttgatttcaaaggagtgattgactacattttctattccaagactcatatgaacgtg
cttggtgtcctggggcctttagatcctcagtggctggttgagaacaacatcactgggtgt
ccacaccctcacatcccttcagaccacttctcactgttaacacaacttgaactccaccct
gccctcctgcctcttgtcaatggtgttcacttgcctaatcggaggtag
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