Perognathus longimembris pacificus (Pacific pocket mouse): 125365105
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Entry
125365105 CDS
T08928
Symbol
Prpf40b
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125365105 (Prpf40b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
plop03041
]
125365105 (Prpf40b)
Spliceosome [BR:
plop03041
]
Complex A
U1 snRNP components
U1 related factors
125365105 (Prpf40b)
Complex B
125365105 (Prpf40b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
WW_2
RhoGAP-FF1
Motif
Other DBs
NCBI-GeneID:
125365105
NCBI-ProteinID:
XP_048220897
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All DBs
Position
1:complement(54548234..54574735)
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AA seq
893 aa
AA seq
DB search
MSVPDSGPRPPAAPAPFPPGPPMMPPPFMPPPGIPPPFPPMGLPPMSQRPPAIPPMPPGI
LPPMLPPMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASSAVAGTGPLRALW
SEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSQE
SRWTRPKDLDDLEALVNQEAAGKQRQSQPLQPQPPQSQPDPPPAPPGPTAVSTGFLEPEP
GGSEDCVVAEAAQPLEQGFLQQPEEGPNSSAGQHQPPQQEEEESKPEPERSGLSWSNREK
AKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEE
ARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYDDVLFFL
AKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDQQLQNMDKE
DALVCFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWME
LYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRCFCVEVNTA
FEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSMLR
QAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLEQTECQHLHTKGRKH
SRKGKKHHRKRSHSPSGSESEEEDLPPPSLRPTKRRRRNPSESGSEPSSSLDSVESGGAT
LGGRGSPSSHLLGSEHGLRKAKKPKKKTKKRRHKSNSPESETDPEEKPGKESEEKEQEQD
KDKELRQAELSNRSPGFGVKKEKTGWDTSESELSEGELERRRRTLLQQLDDHQ
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccgattctggtccccggcccccagcagcgcctgcccccttcccaccgggg
ccccccatgatgccaccacccttcatgccccctccagggattccccctccctttcctccg
atggggctccctcctatgagtcagagaccacctgcgattccccccatgccccctggcatc
ctgcccccaatgctgccacccatgggggcaccaccaccactcacacagataccaggaatg
gtacctccaatgatgccagggatgctgatgccagcagtgcctgtcaccgcagcgacggct
ccgggtgcggacaccgccagctctgctgtggctggaacaggccctctgagggccctatgg
agtgagcatgtggcccctgatgggcgcatctactactacaatgctgacgacaagcagtcc
gtgtgggagaagcccagcgtgctcaagtccaaggccgagctgctgctgtcccagtgcccc
tggaaagagtacaagtcagacacaggcaagccttactactacaacaaccagagccaggag
tcccgctggacccgtcctaaggacctggatgacctggaggctctagtcaatcaagaggct
gctgggaaacagcgacagtcacagccactccagccacagcctcctcagtcccagcctgat
cccccgcctgcacctccgggtcccactgcagtgtccacgggcttcctggaacctgagcca
ggtgggagtgaagactgtgttgtagccgaggctgcccagccactggagcagggcttcctg
cagcagccagaggagggccccaacagctctgctggacagcaccagccaccacagcaggaa
gaagaggaatctaagccagaaccagagcggtctggcctcagttggagcaaccgggagaag
gccaaacaggcattcaaggagctgctgagggacaaggctgtcccttccaatgcctcatgg
gaacaggccatgaagatggtggtcactgaccctcgttacagtgccttgcctaaactgagt
gagaaaaaacaggcattcaatgcctacaaggcacagcgggaaaaggaagagaaggaggaa
gctcggctgagggccaaggaagccaagcagaccctgcagcatttcctggagcaacatgaa
cgcatgacctccaccacacgctaccggcgggcagaacagaccttcggggagctggaggtc
tgggctgtggtccctgaaagggatcgaaaagaggtttatgatgatgtcctcttcttcctg
gccaagaaggagaaggaacaggccaagcagctccggcgccgcaacatccaggccctgaag
agcatcttggatgggatgagtagcgtcaacttccaaaccacgtggtcccaggcccagcag
tacctcatggataaccccagctttgctcaggaccagcagctgcagaatatggacaaggaa
gatgccctggtctgctttgaggagcacattcgagctttggagagggaggaggaggaagag
cgggagcgggcccggcttcgggagcggcgccagcagcgcaagaaccgggaggccttccag
accttcctggacgagctgcacgagacagggcagctacactccatgtccacctggatggag
ttgtacccagcagtcagcactgatgtccgctttgccaacatgctgggccagccgggctcc
acccctctggacttattcaagttctatgtggaggagttgaaggcacgattccatgatgag
aagaagatcattaaagacattcttaaggaccggtgcttctgtgtggaggtgaacacagcc
tttgaggacttcgcccacgtcataagctttgacaagagggctgctgcgctggacgcaggc
aacatcaagctgaccttcaatagtctgctggagaaggcagaggcccgggagagggagcgg
gaaaaggaggaggcccggaggatgcggcgcagggaggctgccttccgaagcatgctgagg
caggccgtgcctgctctggagctgggcactgcgtgggaagaggtccgtgagcgctttgtg
tgcgactcagcctttgagcagatcacccttgagtcggagcggatccggctcttccgggag
ttcctgcaggtgctggagcagaccgaatgccagcacctccacaccaaaggccgaaagcac
agcaggaagggcaagaagcaccatcggaagcgttcccactcgccttcaggctctgagtca
gaagaggaggacctgcccccaccatccctccgacccaccaagcggaggcggcggaacccc
tcagagtcaggctctgaaccctcatcgtcacttgattcagttgaaagtgggggtgctacc
cttggaggacggggatccccatcctcccacctccttggatcagagcatggccttcggaaa
gccaagaaaccaaaaaagaaaactaagaagagaagacacaagtcgaacagccctgagagc
gagacagaccctgaggagaaacctggcaaggagagtgaagaaaaagaacaagaacaggat
aaggacaaggagctccggcaggcagaactctctaaccgctccccgggcttcggagtcaag
aaggagaagacaggctgggacacatcagaaagtgagctgagtgagggagagctggagagg
cgccggcggacactcctgcagcagctagatgaccaccagtga
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