Perognathus longimembris pacificus (Pacific pocket mouse): 125365257
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Entry
125365257 CDS
T08928
Symbol
Abca5
Name
(RefSeq) cholesterol transporter ABCA5
KO
K05648
ATP-binding cassette, subfamily A (ABC1), member 5
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
125365257 (Abca5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
plop02000
]
125365257 (Abca5)
Transporters [BR:
plop02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA5, 6, 8, 9, 10 subgroups
125365257 (Abca5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
RsgA_GTPase
AAA_29
AAA_23
MMR_HSR1
DUF4162
Rad17
Motif
Other DBs
NCBI-GeneID:
125365257
NCBI-ProteinID:
XP_048221174
LinkDB
All DBs
Position
17:complement(47920535..47989561)
Genome browser
AA seq
1642 aa
AA seq
DB search
MATAIREVGVWRQTRTLLLKNYLIKCRTKKSSVQEILFPLFFLFWLILISMMHPNKKYGE
VPDTELNPMDKSILSNLILGYTPVTNITSDIMQRVSTDHLQDVIITEEYANEKEMVASSH
FKSSNFVGVVFKDLMSYELRFFPDMIPVSSIYMDSRAGCSKSCEAAQYWSSGFTVLQASI
DAAIIQLKTNVSVWKELESTRAIIMGETAVIEIDIFPRGVILIYLVIAFSPFGYFLAIHI
VAEKEKKLKEFLKIMGLHDTAFWLSWVLLYTSLIFLMSLLMSVIATASSLFPQSSSFVIF
LLFFLYGLSSVFFALMLTPLFKKSKHVGIVEFFVTVAFGFVGLLIVLMESFPKSLVWLLS
PFCQCTFLIGIAQVMHLEDFNEGALFSNLTEGPYPLIITMTMLALNSIFYVLLAVYLDQV
IPGEFGLRRSSLYFLKPSYWSKSKRNYKELSEGNVNGNISFSEIVEPVSSEFVGKEAIRI
SGIQKTYRKKSENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPSDGFASI
YGYRVSEIDEMFEARKMIGICPQLDINFDVLTVEENLSILASIKGIPANNIIQEVQKVLL
DLDMQAIKDNQAKKLSGGQKRKLSLGIAVLGNPKILLLDEPTAGMDPCSRHIVWNLLKYR
KANRVTVLSTHFMDEADILADRKAVISQGMLKCVGSSIFLKSKWGIGYRLSMYIDRYCAT
ESLSSLVRQHIPGATLLQQNDQQLVYSLPFKDMDKFSGLFSALDIHSNLGVISYGVSMTT
LEDVFLKLEVEAEIDQADYSVFTQQPPEEEMDSKSFDEVEQSLLILSETKASLVNTMSLW
KHQMSTIAKFHFLNLKRESKSVRSVLLLLLIFFAVQIFMFLVHHSFKNAVVPIKLVPELY
LLRPGEKPHKYKTSLLLQNSTDSDISDVINFFTYQDIIVTMFNDSDYVSAAPHSAALNVV
HSEKDYVFTAIFNSTMVYSLPVLMNIISNYYLYHLNVTETIRVWNTPFFQEITDIVFKIE
LYFQAALLGIIVTAMPPYFAMENAENHKIKAYTQLKLSGLLPSAYWIGQAIVDIPLFFVV
LILMLGSLFAFHHGLYFYAVKFLAVVFCLIGYVPSVILFTYIASFTFKKVLNTKEFWSFI
YSVTALTCIVITEITFFMGYTVTAVFHYTFCIAIPIYPLLGCLISFIKVSWKTLPKHENT
FNPWDRLLVAVIMPYLQCILWIFLLQYYEKKHGGRSIRKDPFFRTFSRKSKNKKFPDPPN
NEDEDEDVRAERLKVKELMSCQCCEEKPAIMVSNLHKEYDDKKDFLHSRKVKKVATKYIS
FCVKKGEILGLLGPNGAGKSTIINILVGDIEPTSGQVFLGDYTPDTTDDDNYIKCMGYCP
QINPLWSDITLQEHFEIYGAVKGMSASDMKEVITRITNALDLKEHLQKTIKKLPAGIKRK
LCFALSMLGNPPVTLLDEPSTGMDPKAKQHMWRAIRTAFKNKKRAAILTTHYMEEAEAVC
DRVAIMVSGQLRCIGTVQHLKSKFGKGYFLEIKLKDWIENIEIDRLQREIQYIFPNASRQ
ESFSSILAYKIPKEDVQSLSQCFSKLEEAKHTFAIEEYSFSQATLEQVFVELTKEQEEED
NSCGTLNSTLWWERTQEDRVVF
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atggccactgcaatcagggaggtgggagtttggagacagaccagaacacttctgctgaag
aactatctaattaaatgtaggactaaaaaaagtagtgttcaggaaattctttttccactg
ttttttttattttggttaatattaattagcatgatgcatccaaataagaaatatggagaa
gtgcctgatacagaacttaatcctatggacaagtctatcctttctaaccttattcttgga
tacactccagtgactaatattacaagtgacatcatgcagagagtatctacagatcacctt
caagatgtcataatcactgaggagtatgcaaatgagaaagaaatggtagcttcaagtcat
tttaagtccagcaactttgtaggtgtggttttcaaagacttgatgtcctatgaactccgt
ttctttcctgatatgattccagtgtcttccatttatatggattcaagagctggctgttca
aaatcatgtgaggctgctcagtactggtcctcaggatttacagttttacaggcatccata
gatgctgccatcatacagttgaagaccaacgtttctgtttggaaggagctggagtccact
agagctattattatgggggaaactgctgttatagaaatagacatttttccccgaggagtg
attttaatatacctggttattgcattttcaccttttggatactttttggcaattcatatt
gtagcagaaaaagaaaaaaaattaaaggaatttttaaagataatgggactgcatgacact
gctttttggctttcctgggtgcttctgtatacaagcttgattttccttatgtcccttcta
atgtcagtcattgcaacagcttcttcattattccctcaaagtagcagctttgtaatattt
ctactctttttcctgtatggattgtcctctgtattttttgctttaatgctgacaccactt
tttaaaaaatcaaaacatgtgggaatagttgaatttttcgtcactgtggcttttggattt
gttggccttttgatagtcctcatggaaagttttcccaagtcattagtttggcttttaagt
ccattctgtcagtgtacttttttgattggtattgcacaggtcatgcatttagaagacttt
aatgaaggtgctttattttctaatttgactgaaggcccatatcctctaattattactatg
accatgctagcacttaatagcatattttatgttctcctggcggtctatcttgatcaagtc
attccaggggagtttggcttaaggagatcatctttatattttctaaagccatcatattgg
tcaaaaagcaaaagaaattataaagagttatcagaaggcaatgttaatggaaatattagt
tttagtgaaattgttgagcctgtttcttcagaatttgtaggaaaagaagccataagaata
agtggtattcagaagacataccgaaagaaaagtgaaaatgtcgaggctttgagaaatttg
tcattcgacatctatgaaggtcagatcactgcattacttggccatagtggaacaggaaag
agtacattgatgaatattctttgtggactatgcccaccttctgatgggtttgcatctata
tatggatacagagtctcagaaatagatgaaatgtttgaagcaagaaaaatgattggcatt
tgtccacagttagatataaactttgatgttttgacagtagaagaaaatttgtcaatcttg
gcttcaatcaaaggaataccagctaacaatataatacaagaagtgcaaaaggttttatta
gatttagacatgcaggctatcaaagataaccaagctaaaaaactaagtggtggtcagaaa
agaaaattgtctttaggaattgctgttcttgggaatccaaagatactgctgctagatgag
ccaacagctggaatggacccctgttctcgccatattgtttggaatcttttaaagtacaga
aaagccaaccgagtgactgtgcttagtactcatttcatggatgaagctgatattcttgct
gataggaaagctgtcatatcacaaggcatgttgaaatgtgttggctcttcaattttcctc
aaaagtaaatgggggatcggctatcgcctcagcatgtacatagacagatactgtgccact
gaatctctttcttcattggtcagacaacacatacctggggctactttattacagcagaat
gaccaacagcttgtgtatagcttgcctttcaaagacatggacaaattttcaggtttattt
tctgctcttgacattcattcaaatttgggtgttatttcttatggtgtttccatgacaact
ttagaggatgtattcttaaagctagaagttgaagcagaaattgaccaagcagattatagt
gtatttacacagcagccaccagaggaagaaatggattcaaaatcttttgatgaagtggaa
cagagcttacttattctttctgaaaccaaagcttctctagtgaataccatgagtctttgg
aaacatcagatgtctacaatagcaaagtttcatttccttaacttgaagcgtgaaagtaaa
tcagtgagatcagtgttgcttctgcttttaatattttttgcagttcagatttttatgttt
ttggtacatcactcttttaaaaatgctgtggttcccatcaaacttgttccagagttatat
ttactgaggcctggagagaaaccccataagtacaaaacaagcctgcttcttcaaaattct
actgactcagatatcagtgatgttattaactttttcacataccaggacataattgtgaca
atgtttaatgacagtgactatgtatctgctgctccccatagtgcagctttaaatgtggtg
cattcagaaaaggactatgttttcacagctattttcaacagtactatggtttattcttta
ccggtattgatgaatattatcagtaactactacctttatcatttaaatgtgactgaaact
attcgggtctggaataccccattctttcaggaaattactgacatcgtgtttaagattgag
ctgtattttcaagcagctctgcttggaattattgttactgcaatgcctccttactttgca
atggaaaatgcagagaatcataagatcaaagcttatactcaacttaaactttcaggtctt
ttgccatctgcatattggattggacaagcaattgttgatatccctttattttttgttgtt
ctcattttgatgctaggaagcttatttgcatttcatcatggattatatttttatgctgta
aagttccttgctgtggttttttgccttattggttatgttccatcagttattctgtttact
tacattgcatctttcacctttaagaaagttttaaacaccaaagagttttggtcatttatc
tattctgtgacagcattgacttgtattgtaatcactgaaataaccttcttcatggggtat
acagtaacggctgtttttcattacaccttttgtatagccattccaatctatccacttctg
ggttgcctcatttctttcataaaggtttcttggaagacattaccaaagcatgagaatact
ttcaatccatgggacaggcttttagtagctgttataatgccttaccttcagtgtattctg
tggattttccttctgcaatattatgagaaaaaacatggaggcagatcaataagaaaggat
ccctttttcaggaccttttccaggaagtccaaaaacaagaagtttccagatcctccaaac
aatgaagatgaagatgaagatgtcagagctgaaagactgaaggtcaaagagctgatgagt
tgccaatgttgtgaagagaagccagccatcatggtcagcaatttgcataaagaatatgat
gacaagaaagattttctccattcaaggaaagtaaagaaagtggcaactaaatacatctcg
ttctgtgtgaaaaaaggagaaatcttgggactattaggtccaaatggtgcaggaaaaagc
acaattattaatattttggttggtgatattgagccaacttcaggccaggtatttctggga
gattatactccagacacaactgatgatgataactacattaagtgtatgggttactgtcct
cagataaatccattgtggtcagatattacattgcaggaacattttgaaatttatggagct
gtgaaaggaatgagtgccagtgacatgaaagaagtaataacccgaataacaaatgccctt
gatttaaaagaacatcttcagaaaactataaagaaactacctgcaggaattaagcgaaag
ttatgctttgctctgagcatgcttgggaatcctccagttactctgttagatgaaccatct
acaggtatggaccctaaagccaaacagcacatgtggcgagcaattcgaactgcatttaaa
aacaaaaagcgggctgctatactgactacacattacatggaagaagcagaggctgtctgt
gaccgagtggctattatggtgtctgggcagttaagatgtattgggacagtgcaacatcta
aagagtaaatttggaaaaggctactttttggaaattaaattaaaagactggatagaaaac
atagaaatagatcgccttcaaagagaaattcagtatattttcccaaatgcaagccgtcag
gaaagtttttcttctattctggcttataaaattcctaaagaagatgttcagtctctttcg
cagtgtttttctaagttggaagaagctaaacatacttttgccattgaagaatacagtttc
tctcaagcaacattggaacaggtttttgtagaactcaccaaagagcaagaggaagaagac
aatagctgtggcactttaaatagcacactttggtgggaaagaacacaggaagacagagta
gtattttga
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