Perognathus longimembris pacificus (Pacific pocket mouse): 125365262
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Entry
125365262 CDS
T08928
Symbol
Prpf8
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125365262 (Prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
plop03041
]
125365262 (Prpf8)
Spliceosome [BR:
plop03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125365262 (Prpf8)
Complex C
U5 SnRNP specific factors
125365262 (Prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
125365262
NCBI-ProteinID:
XP_048221181
LinkDB
All DBs
Position
17:16752814..16782636
Genome browser
AA seq
2335 aa
AA seq
DB search
MAGVFPYRGPGNPVPGPLAPLPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKED
MPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLY
HITGAISFVNEIPWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYAD
NILDVEPLEAIQLELDPEEDAPVLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYR
LANQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFNDIN
KIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPIS
HRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFNLRSGRTRR
ALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQF
EGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCW
KANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLI
LALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMD
LYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGIN
NLQDVWETSEGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYK
DMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDIATE
AAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARM
RLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIV
NKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPK
ELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFI
DSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRT
DFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEG
LFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGI
FMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSY
KMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYA
RAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKANPAL
YVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTT
KPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQ
IIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLY
DDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVE
VQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLT
ATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKET
GYTYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLP
SQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTP
GSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWN
YNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA
NT seq
7008 nt
NT seq
+upstream
nt +downstream
nt
atggccggagtatttccttaccgagggccgggtaacccggtgcccggccctctagcccca
ctgccggactacatgtcggaggagaagctgcaggaaaaagcccgaaaatggcagcagttg
caggccaagcgatatgcagaaaagcgcaagtttgggtttgtggatgctcaaaaggaagac
atgcccccagaacatgtcaggaagattattcgagaccatggagacatgaccaacaggaag
tttcgtcatgacaaaagagtctatttgggtgccctaaagtatatgcctcatgctgtcctc
aagctcctggagaacatgcctatgccttgggagcagatccgggatgtgcctgtgctgtac
cacatcactggagccatttccttcgtcaatgagattccctgggtcattgaaccagtctac
atctcccaatgggggtcaatgtggattatgatgcgtcgagaaaaaagagacaggagacat
ttcaagaggatgcgtttccctccttttgatgatgaggaaccgccccttgattatgccgac
aacatcttagacgttgagccactggaagccattcaactcgagctggaccctgaggaggat
gcccctgtgttggattggttctatgaccaccagcccttgagagacagcagaaagtatgtt
aatggctctacttaccagcgctggcagttcacactgcctatgatgtctactctctaccgc
ctggccaatcagcttcttacagacttggtggatgacaactacttctatctgtttgatctg
aaggccttctttacttctaaggcactcaacatggccattcctggaggaccgaaatttgaa
cctcttgttcgagacatcaatctacaggatgaagactggaatgagttcaatgatattaat
aagataataattcggcagcctattcgaacggaatacaagattgcttttccttacctgtac
aacaatcttccacaccatgtccatcttacctggtaccacactcctaatgttgtattcatc
aagactgaggatcctgatttgcctgctttctactttgatcctttgatcaatccaatctcc
cataggcactcagtcaagagccaggaaccactgccagatgatgatgaggagttcgagctc
ccagagtttgtagagcccttcctgaaggacacacccctctacacagacaatacagccaat
ggcattgccctgctttgggctcctcggcccttcaacctacgttctggtcgtacccgccgg
gccctggatataccgcttgtcaagaactggtatcgggagcattgtcctgctggacagcct
gtgaaagtgcgagtctcctatcagaagttgcttaagtactatgtgctgaatgccttgaag
catcggccccctaaggcccaaaagaagaggtatctgttccgctccttcaaagctaccaaa
ttctttcagtccacaaagctggactgggtggaagtgggcctacaagtttgtcgccaggga
tacaacatgcttaaccttctcattcatcgtaaaaatctcaactacctgcacctggactat
aacttcaacctcaagcctgttaagacactcaccaccaaggaaagaaagaaatctcgtttt
gggaatgcgtttcatctttgccgggaagtactgcgattaactaagctggttgtggacagt
catgtgcagtatcgcttgggcaatgtggatgcattccagctggcagatggactgcaatat
atatttgcccacgtggggcagctgactggcatgtatcgatataaatacaagttgatgcga
caaatccgcatgtgcaaggacctgaagcatcttatttattaccgcttcaacacgggcccc
gtagggaagggccctggctgcggcttctgggctgctggctggcgtgtctggctgtttttc
atgcgtggcattactcctttgctggaaagatggttgggcaacctcctggcccggcagttt
gaaggtcgacattcaaagggggttgcaaagacagtgaccaagcagcgagtagagtcccat
tttgaccttgaacttcgggcagctgtgatgcatgatattctggacatgatgcctgagggc
atcaaacagaacaaggcccgtacaattctgcagcacctcagtgaagcctggcgctgctgg
aaggcaaatattccctggaaggttccagggctgccaacacccatagagaatatgatcctt
cgatatgtgaaggccaaggctgactggtggactaatactgcccattataacagagaacga
attcgtcgtggggccactgtagacaagactgtttgcaaaaagaacttgggccgcctcacc
cggctctacctgaaggcagaacaggagcggcagcacaattacctgaaggatgggccttac
atcacagcagaggaagcagtagcagtgtataccaccactgtacactggctagaaagtcgt
agattctctcccatccctttccccccactttcctacaagcatgatactaagttgctcatt
ttggctctggaacgactcaaggaagcttatagtgtcaaatctcggttgaaccaatctcag
agggaggagctaggtctgattgaacaagcttatgacaacccacatgaggcattgtctcgc
atcaagcgtcacctcctcacacagcgagcctttaaggaagtgggcattgagtttatggac
ctctatagccacctagtaccagtgtatgatgtggagccactggagaagataactgatgct
tacctggaccagtatctatggtatgaagcagacaaacgacgccttttccctccttggatc
aaacctgctgacacagaaccacctccactgcttgtttacaagtggtgccaaggtatcaac
aacctacaggatgtatgggagaccagtgagggcgagtgtaatgttatgctggaatcacgc
tttgagaagatgtatgaaaagattgacttgaccctacttaataggttactgcgacttatt
gtggaccacaacatagctgactatatgacagctaagaacaatgttgtcatcaactataag
gacatgaaccatacaaattcatatgggattatcagaggcctgcagtttgcctcgttcata
gtgcagtactatggcttggtgatggatttgcttgtgttgggattgcaccgagccagtgag
atggctggaccccctcagatgccaaatgacttcctcagtttccaagacatagccactgag
gctgcccatcccatccgactcttctgtagatacattgatcgcatccatattttcttcagg
ttcacagcagatgaagctcgggacctgatccaacgttatttgacagagcaccctgacccc
aacaatgagaacattgttgggtataataacaagaaatgctggccccgagatgctcgcatg
cgtctcatgaagcatgatgtcaacttgggtcgagcagtcttctgggacatcaagaaccgt
ctgccacgatcggtgaccacagttcaatgggagaacagctttgtgtctgtgtatagtaaa
gataaccccaacctgctgttcaacatgtgtggctttgagtgccgtatcctgcctaaatgc
cgtaccagctatgaggagttcacccacaaggatggagtatggaacctacagaatgaggta
accaaggagcgaacagcccagtgtttcctgcgtgtggatgacgagtcaatgcagcgcttc
cacaatcgtgtgcgtcaaattttgatggcctctggatctaccaccttcacaaagattgtg
aataagtggaatacagctctcatcggccttatgacatactttcgagaggctgtagtgaat
acccaggaactcctggacttgctggtaaagtgtgagaataagatccagacacgtatcaag
attggactcaactccaagatgccaagtcggtttcctcctgttgtgttctacactcctaag
gaattgggtggacttggcatgctttccatgggccatgtgcttatcccccagtctgacctc
aggtggtccaagcagacagatgtaggtattacacactttcgttcaggaatgagtcatgaa
gaagaccagctgatccccaacttataccgctacatacagccatgggagagtgaattcatt
gactctcagcgcgtctgggctgaatatgcactcaagagacaagaggccattgctcagaac
agacggctgactttggaagatctagaagattcatgggatcgtggcattcctcgaatcaac
acccttttccaaaaggatcggcacacattagcttatgataagggctggcgtgtcagaact
gactttaagcagtaccaggttttgaaacagaaccctttctggtggacacaccagcggcat
gatggaaagctctggaacctaaacaactaccgtacagacatgatccaggccctgggtggt
gtagaaggcattctggagcacacactctttaagggcacctacttccctacctgggaaggt
cttttctgggagaaggccagtggctttgaggaatctatgaagtggaagaaactaaccaat
gctcagcgatcaggattgaaccagattcccaaccgtagatttaccctttggtggtcccca
accataaatcgagccaatgtatacgtaggctttcaggtacagctggacctgacaggtatc
ttcatgcatggcaagatccctacgctgaagatctctctcatccagatattccgagctcac
ttgtggcagaagatccatgagagcattgttatggacttgtgtcaggtgtttgaccaggaa
ctggatgcactggaaattgagactgtgcaaaaggagacaatccatcctcgaaagtcctat
aagatgaactcttcctgtgcagacatattactgtttgcctcttataagtggaatgtctct
cggccttcattgctggctgattccaaggatgtgatggacagcaccaccactcagaagtat
tggattgacatccagttgcgctggggagactatgattcccatgatatcgagcgctatgcc
agggctaagttcctggactataccacagacaacatgagtatttacccttcacccacaggt
gtgctcattgccattgacctggcttataacctgcacagtgcctatggaaactggtttcca
ggtagcaagcctctcatacagcaggccatggccaagatcatgaaggcaaatcctgccttg
tatgtgttacgtgaacggattcgcaagggactccagctctattcatctgaacccactgag
ccttatctgtcctctcagaactatggtgaactcttctccaaccagattatctggtttgtg
gatgacaccaatgtctaccgagtgactatccacaagacctttgaagggaacttgacaacc
aagcctatcaatggggccatcttcatcttcaatccacgcacaggacaattgttcctcaag
ataatccatacatctgtgtgggctggacaaaagcgtttagggcagttggccaagtggaag
acagctgaagaagtggctgccctgatccgatctctgcctgtggaggagcagcccaagcag
atcattgtcaccaggaagggcatgttagatccattggaggtacacttactggacttcccc
aacattgtgatcaaaggatcagagctccagctccccttccaggcttgtctcaaagtggaa
aagtttggggatctcatccttaaagccactgagccccaaatggttctcttcaacctctat
gatgactggctcaagactatttcatcttacacggctttctcccgtctcatcctgattctt
cgggccctgcacgtgaacaatgaccgtgcaaaggtgatcctgaagccagacaaaactact
attacagaaccccaccacatatggcctaccctgactgacgaggagtggatcaaggtggag
gtgcagcttaaggatcttatcttggctgactacggcaagaaaaacaatgtgaatgtggca
tcactgacacagtcagaaattcgagacatcatcctgggtatggagatctcagctccatca
cagcagcggcagcagatagctgagattgagaagcagactaaggaacagtcacagctgacc
gcaacccagacgcgcactgtcaacaagcatggcgatgagattatcacctctaccaccagc
aactatgagacacagaccttctcatctaagactgaatggagggtcagggccatctctgct
gccaacctgcacctacggaccaatcacatttacgtgtcatctgatgacatcaaggagact
ggctatacttacatccttccaaagaatgtgcttaagaagttcatctgcatatctgacctt
cgagcccaaattgctggatacctctatggggtgagcccgccagataacccccaggtgaag
gagatccgctgtatcgtaatggtaccacagtggggcactcaccagactgtgcacttgcct
agccagctgccccagcatgagtaccttaaggagatggaacccttaggttggatccacaca
cagcccaatgaatccccccagctatcaccccaggatgtcaccacccatgccaagatcatg
gctgacaacccatcttgggatggtgagaagaccattatcatcacatgcagcttcacacca
ggctcctgcacactgacagcctataagctgacccctagtggctatgaatggggccgccag
aacacagacaaaggcaacaaccccaaaggttaccttccctcacattatgagagggtccag
atgctgctgtctgatcgcttcctcggcttcttcatggttcctgcccagtcctcatggaac
tacaactttatgggtgtccggcatgatcccaacatgaagtatgagcttcagctggcaaac
cccaaagagttctaccatgaggtgcacagaccctcccatttcctcaactttgcactcttg
caggagggcgaagtctattctgcagaccgtgaagacctctatgcctag
DBGET
integrated database retrieval system
