Perognathus longimembris pacificus (Pacific pocket mouse): 125365417
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Entry
125365417 CDS
T08928
Symbol
Rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03030
DNA replication
plop03420
Nucleotide excision repair
plop03430
Mismatch repair
plop03440
Homologous recombination
plop03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125365417 (Rpa1)
03420 Nucleotide excision repair
125365417 (Rpa1)
03430 Mismatch repair
125365417 (Rpa1)
03440 Homologous recombination
125365417 (Rpa1)
03460 Fanconi anemia pathway
125365417 (Rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plop03000
]
125365417 (Rpa1)
03032 DNA replication proteins [BR:
plop03032
]
125365417 (Rpa1)
03400 DNA repair and recombination proteins [BR:
plop03400
]
125365417 (Rpa1)
Transcription factors [BR:
plop03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
125365417 (Rpa1)
DNA replication proteins [BR:
plop03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
125365417 (Rpa1)
DNA repair and recombination proteins [BR:
plop03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
125365417 (Rpa1)
MMR (mismatch excision repair)
125365417 (Rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
125365417 (Rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
Motif
Other DBs
NCBI-GeneID:
125365417
NCBI-ProteinID:
XP_048221409
LinkDB
All DBs
Position
17:complement(16569698..16629763)
Genome browser
AA seq
616 aa
AA seq
DB search
MVSHLSEGAIAAIMQQGNTSIKPILQVINIRAITTGNSPPRYRLLMSDGLNTLSSFMLAT
QLNSLVEQEQLSSNCICQINRFIVNTLKDGRRVIILMDLEVLKSAEEVGLKIGNPVAYNE
GHGQQQVVPSAVSTASPVVSKPQQQNGSSGTGSTVSKTYGASKTFGKPAGAGLSYPSGGA
QSKVVPIASLTPYQSRWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNE
QVDKFFPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVVPCEDDHHLPTVQF
DFTGIGDLENKSKDSLVDILGVCKNYEDATKITIKSNNREVAKRNVYLMDMSGKVVTATL
WGEDADKFDGSRQPVIAIKGARVSDFGGRSLSVLSSSTIIMNPDIPEAYKLRGWFDSEGQ
ALDGVSISDQRGGGTGGSNTNWKTLYEAKLENLGQGDKADYFSSVATVIYLRKENCMYQA
CPSQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSANIADFQENQWVTCFQESAEAIL
GQNTAYLGELKEKNEQAFDEVFQNANFRTFTFRIRVKLETYNDESRIKATVMDVKPMDYR
EYGRRLVTLIRKNALL
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggtcagccacctgagtgaaggggccattgcggccataatgcaacagggaaacacttct
atcaaacccatcctccaagtcattaacatccgcgctattactacagggaatagtccaccc
cgataccgactacttatgagtgatggattgaataccctgtcctctttcatgttggcaacc
cagttgaactctcttgttgagcaagaacaattgtccagcaactgtatttgccagattaac
cgatttatcgtcaacactctgaaagatggaaggagagtaattattttgatggatctagaa
gttttgaagtcagcggaagaagttggattaaagatcggcaatccagtggcctataatgaa
ggacacggacaacagcaagttgtgccttctgcagtctcgacagccagcccggtggtcagc
aagccccagcaacagaatgggagctcaggaactggttccactgtatctaagacttatggt
gcctcaaagacatttggaaaacctgctggagctggcctctcatacccttctgggggagca
cagtccaaagtggtgccgattgccagcctcaccccttaccagtccaggtggaccatttgt
gctcgtgtcaccaacaaaagtcagatccgtacctggagcaattcccggggggaagggaag
cttttctctctagaacttgtggatgaaagtggtgaaatcagagctactgctttcaatgag
caagtggacaagttcttcccccttattgaagtgaataaggtgtattatttctcaaaagga
accctgaagatcgctaacaaacagttctcagctgttaaaaatgactatgagatgaccttc
aacaatgagacttctgttgtgccctgcgaagatgatcatcacttgcccactgttcagttt
gatttcacagggattggtgacttagagaacaagtctaaagactcgcttgtagacatactt
ggggtctgcaagaattatgaagatgccactaagatcacaatcaaatctaacaacagggaa
gttgctaagaggaatgtctatctgatggacatgtcggggaaagtggtgactgctactctg
tggggggaagatgcggacaagtttgatggttctagacagcctgtaatagccatcaaaggg
gccagagtctctgattttggtgggcggagtctctctgtactgtcttcaagcactatcatt
atgaatcctgacatcccagaggcctataagttgcgtggatggtttgactcagaaggacaa
gctttagatggtgtttccatctctgatcaaaggggtggaggaacaggagggagcaacacc
aactggaaaactttgtatgaggctaaattggagaacctgggccagggtgacaaggcagac
tatttcagctctgtggccacagtgatatatcttcgcaaagagaactgtatgtaccaagcc
tgtccatctcaggactgcaataagaaagtgattgaccagcagaatggcctttaccgctgc
gagaagtgtgaccgggaatttcctaacttcaaataccgcatgatcttgtctgctaacatt
gctgattttcaagagaatcaatgggtgacttgtttccaggagtcagctgaagcgatcctt
ggacagaatactgcttaccttggggaactcaaagagaagaatgagcaggcatttgatgaa
gttttccagaatgccaactttcgaactttcaccttcagaatcagagtcaaactggagacc
tacaatgacgagtctcgaattaaggccaccgtgatggacgtgaagcccatggactacaga
gagtatggccggaggctagtcacactcatcaggaagaatgctctgctgtga
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