Perognathus longimembris pacificus (Pacific pocket mouse): 125365631
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Entry
125365631 CDS
T08928
Symbol
Col1a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04151
PI3K-Akt signaling pathway
plop04510
Focal adhesion
plop04512
ECM-receptor interaction
plop04611
Platelet activation
plop04820
Cytoskeleton in muscle cells
plop04926
Relaxin signaling pathway
plop04933
AGE-RAGE signaling pathway in diabetic complications
plop04974
Protein digestion and absorption
plop05146
Amoebiasis
plop05165
Human papillomavirus infection
plop05205
Proteoglycans in cancer
plop05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
125365631 (Col1a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125365631 (Col1a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125365631 (Col1a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125365631 (Col1a1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
125365631 (Col1a1)
09152 Endocrine system
04926 Relaxin signaling pathway
125365631 (Col1a1)
09154 Digestive system
04974 Protein digestion and absorption
125365631 (Col1a1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
125365631 (Col1a1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
125365631 (Col1a1)
09174 Infectious disease: parasitic
05146 Amoebiasis
125365631 (Col1a1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
125365631 (Col1a1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
125365631 (Col1a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
plop00536
]
125365631 (Col1a1)
Glycosaminoglycan binding proteins [BR:
plop00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125365631 (Col1a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
125365631
NCBI-ProteinID:
XP_048221774
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All DBs
Position
17:34018484..34034462
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AA seq
1462 aa
AA seq
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MFSFVDLRLLLLLAATALQTHGQEAGEVVRQQEDIPQVSCIKDGIRHPNNATWKPEPCLV
CICNNGTTMCDDVICDNSFDCAEPQILEGECCPVCVEHSVSPDQESLGVEGPKGDTGPRG
PRGPAGPPGRDGIPGQAGLPGPPGPPGPPGPPGLGGNFAPQMSYGYDEKSAGVSVPGPMG
PSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPG
ERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMG
PRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGARG
SEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQG
PSGAPGPKGNSGEPGAPGNKGDTGAKGDPGPTGIQGPPGPAGEEGKRGARGEPGPTGLPG
PPGERGGPGSRGFPGADGVAGPKGPAGERGAPGPAGPKGSPGEPGRPGEAGLPGAKGLTG
SPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPG
PPGAVGPAGKDGEAGAQGPPGPSGPAGERGEQGPAGSPGFQGLPGPXGPPGEAGKTGEQG
VPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGSNGAPGNDGAKGDAGAPGAPGSQG
APGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKG
ESGPSGPPGPTGARGAPGDRGEAGPPGPAGFAGPPGADGQPGAKGEPGDSGAKGDAGPPG
PAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPVG
KEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGSPGTPGPQGIAGQRGVVG
LPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGSPGAEG
SPGRDGSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPIGPVG
ARGPAGPQGPRGDKGETGETGERGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRG
PPGSAGAAGKDGLSGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSGGFDFSFMP
QPPQEKAQDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDL
KMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVFPTQPTVAQKNWYISKNPKEKK
HVWFGESMTGGFQFEYGSDGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDKQTG
NLKKSLLLQGSNEIELRGEGNSRFTYSTLEDGCSSHTGTWGKTVIEYKTTKTSRLPIIDV
APLDIGAPDQEFGIDIGPACFV
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacctccggctcctgctcctcttagcggccaccgccctccagacg
cacggccaagaggcaggcgaagtcgtgcgccaacaggaagacatcccccaagtcagctgc
ataaaggatggcatccggcatcctaacaacgcaacgtggaaacccgagccctgcctggtc
tgtatctgcaacaatggcaccacgatgtgtgacgatgtgatctgcgacaactccttcgac
tgtgccgagccccagatcctcgagggcgagtgctgtcctgtgtgtgtggagcactcggta
tcaccagaccaagaaagcctaggagtcgagggacccaagggagacactggcccccgaggc
ccacggggacctgccggcccccctggacgagatggcatccccggacaggctggacttccc
ggacccccaggccctcctggacctcccggaccccctggccttggaggaaactttgctcct
cagatgtcttatggttatgatgagaaatcagctggagtttccgtgcccggccccatgggt
ccctctggtcctcgaggtctccccggcccccctggcgcacctggtccccaaggttttcaa
ggaccccctggtgagcctggcgaacctggagcctcaggtcccatgggtccccgaggcccc
ccaggaccccctggcaagaacggagatgatggggaagctggcaaacctggccgtcctggt
gaacgtggaccccctgggcctcagggtgctcggggattgcccggaacagctggccttcct
ggaatgaagggacacagaggtttcagtggtttggatggtgctaagggagatgctggccct
gctggtcccaagggtgagcctggcagccctggtgaaaatggagctcctggccagatgggt
cctcgtggtctgcctggtgagagaggtcgccctggagcccctggccctgctggtgcacgt
ggaaatgatggtgctactggtgcagctgggcccccgggtcccactggccccgctggtcct
cctggctttcctggtgctgttggtgctaagggtgaagctggtccccaaggagcccgaggt
tctgaaggtccccagggtgtgcgtggtgagcccggcccccctggccctgctggtgctgct
ggtcctgctggaaaccctggtgctgatggacaacctggtgctaaaggtgccaatggcgct
cccggtattgctggtgctcctggcttccccggtgcccgtggtccctctggaccccagggt
cccagcggcgcccccggtcccaagggaaacagcggtgaacctggtgctcccggaaacaaa
ggagacactggtgccaaaggagatcctggccctactggtattcaaggaccccctggccct
gctggtgaagaaggaaagcgaggagcccgaggtgaacctggacctactggcctgcctgga
ccccctggcgagcgtggtggacctggtagccgtggatttcccggtgcagatggcgttgct
ggtcctaagggtcctgctggtgaacgtggtgctcctggtcctgctggtcccaaaggttct
cctggtgaacctggtcgtcccggagaagctggcctgcctggtgccaagggtctgactgga
agtcctggcagccctggtcctgatggcaaaactggaccccctggccccgctggtcaagat
ggtcgacctggacccccaggcccccctggtgcccgtggtcaggctggtgtgatgggattc
cctggacctaaaggtgctgctggagaacccggaaaagctggagagcgaggtgtcccagga
ccccctggtgctgttggtcctgctggaaaagatggagaagctggagctcagggacccccc
ggcccttctggtcctgctggtgagagaggtgaacaaggtcctgctggctcccccggattc
cagggtcttcctggcccgnctggtcctcccggtgaagcaggcaaaactggtgaacagggt
gttcccggagaccttggtgcccctggcccctctggagcaagaggcgagagaggtttccct
ggcgaacgtggtgtgcaaggtccccctggacctgctggtccccgtggatccaacggtgct
cctggcaatgatggtgccaagggtgatgctggtgcccctggagcccctggtagccaaggt
gctcctggtcttcaaggaatgcccggtgaacgtggtgcagctggtcttccaggccctaag
ggcgacagaggtgatgctggtcccaaaggtgctgatggttctcctggcaaagatggagtc
cgtggtctgactggccccattggtcctcctggtcctgctggtgctcctggtgacaagggt
gaatctggtcccagtggccctcctggtcccactggagcccgcggtgcccccggtgaccgt
ggtgaggctggtccccctggccctgctggcttcgctggcccccctggtgctgatggccaa
cccggtgctaaaggcgaacctggtgatagtggtgctaaaggcgatgctggtcctcctggc
cctgctggccctgccggaccccctggtcccattggtaacgttggtgctcctggacccaaa
ggtgctcgtggcagtgctggtccccctggtgctactggttttcctggtgctgctggccga
gtcggtccccctggcccctctggaaatgctggtcctcccggccctcctggccctgttggc
aaagaaggcggcaaaggtccccgtggtgagactggtcctgctggacgtcctggtgaagtt
ggtccccctggtcctcctggccctgctggcgagaaaggatctcctggtgccgatgggcct
gctggctctcctggtactcccggacctcagggtattgctggacaacgtggtgtggttggt
ctgcctggtcagagaggagaacgaggtttcccaggtctccccggcccctctggcgagccc
ggcaaacaaggtccttctggagcaagtggagaacgtggtccccctggtcccatgggcccc
cctgggttagctggacctcctggtgaatctggacgtgagggatctcctggcgcagaaggc
tcccctggaagagacggctctcctggccccaagggtgaccgtggtgagactggccctgct
ggaccccctggtgctcctggtgctcccggtgcccctggtcctgttggccctgctggcaag
agtggcgatcgtggtgagactggtcctgctggtcctgctggccccatcggtcctgttggt
gcccgtggtcctgctggaccccaaggtccccgtggtgacaagggtgagacaggcgaaacc
ggcgagagaggcataaagggtcaccgtggcttctctggtctccagggtccccctggacct
cctggctcccctggtgaacaaggtccctctggagcttctggtcctgctggtcctcgtggt
cctcctggctctgctggtgctgctggcaaagatggacttagtggtctccctggtcccatc
ggtcctcctggtcctcgtggtcgcactggtgacgctggtcctgttggtcctcctggtcct
cctggaccccctggtccccctggtcctcccagcggcggtttcgacttcagcttcatgccc
cagccacctcaagagaaagctcaggatggtggccgctactaccgggctgatgatgccaat
gtggtccgtgaccgtgaccttgaagtggacactaccctcaagagcctgagccagcagatc
gagaacatccgcagccctgaaggcagccgcaagaaccctgcccgcacctgccgcgacctc
aagatgtgccactctgactggaagagcggagagtactggatcgatcccaaccaaggctgc
aacctggatgccatcaaagtcttctgcaacatggaaactggagagacctgcgtgttcccc
acccaacctactgtggctcagaagaactggtacatcagcaagaaccccaaggagaagaag
cacgtatggttcggcgagagcatgactggtggattccagttcgaatatggcagtgatggc
tccgaccctgccgatgtggctatccagctgaccttcctgcgcctgatgtccaccgaggcc
tcccagaacatcacctaccactgcaagaacagcgtagcttatatggacaagcagactggc
aacctcaagaagtccctgctcctccagggctccaacgagatcgagctccgaggcgaaggc
aacagccgcttcacctacagcaccttggaggatggctgctcgagccacactggaacctgg
ggcaagacagtcatcgagtacaaaaccaccaagacctcccgcctgcccatcatcgatgtg
gctcccttggacattggcgccccagaccaggaattcggaatcgacattggccctgcctgc
ttcgtgtaa
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