Perognathus longimembris pacificus (Pacific pocket mouse): 125365964
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Entry
125365964 CDS
T08928
Symbol
Cntn1
Name
(RefSeq) contactin-1 isoform X1
KO
K06759
contactin 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
125365964 (Cntn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
plop04515
]
125365964 (Cntn1)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
plop00537
]
125365964 (Cntn1)
Cell adhesion molecules [BR:
plop04515
]
Immunoglobulin superfamily
Contactins
125365964 (Cntn1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
plop00537
]
Others
125365964 (Cntn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_DSCAM-DSCAML_C
Ig_5
Pur_ac_phosph_N
Sp38
C2-set_2
Motif
Other DBs
NCBI-GeneID:
125365964
NCBI-ProteinID:
XP_048222262
LinkDB
All DBs
Position
1:complement(61045864..61335028)
Genome browser
AA seq
1018 aa
AA seq
DB search
MKMWLLAGSLVLLSFTTCLAEFTWHRRYGHGVSEEDKGFGPIFEEQPINTIYPEESLEGK
VSLNCRARASPFPVYKWRMNNGDVDLTSDRYSMVGGNLVINNPDKQKDAGIYYCLASNNY
GMVRSTEATLSFGYLDPFPPEERPEVKVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVF
ITMDKRRFVSQTNGNLYIANVEASDRGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPY
PADIVVQFKDIYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNI
QLEDEGIYECEAENIRGKDKHQARIYVQAFPEWVEHINDTEVDIGSDLYWPCIATGKPIP
SIRWLKNGYAYQKGELRLYDVTFDNAGMYQCIAENTYGAIYANAELKILALAPTFEFNPM
KKKLLAAKGGRVIIECKPKAAPKPKFSWSKGTEWLVNSSRVLIWEDGSLEINNITRNDGG
VYTCFAENNRGKANSTGTLVITDPTRIILAPINADITVGENATMQCAASFDPSLDLTFVW
SFNGYVIDFNKENVHYQRNFMLDANGELLIRNAQLKHAGRYTCTAQTIVDNSSASADLVV
RGPPGPPGGLRIEDIRATSVALTWSRGSDNHSPISKYTIQTKTILSDDWKDAKTDPPIIE
GNMEAAKAVDLIPWMEYEFRVVATNTLGIGEPSLPSNRIKTDGAAPNVAPSDVGGGGGSN
RELTITWAPLSREYHYGNNFGYIVAFKPFDGEEWKKVTVTNPDTGRYVHKDESMSPSTAF
QVKVKAFNNKGDGPYSLIAVINSAQDAPSEAPTEVGVKVLSSSEISVHWKHVLEKIVESY
QIRYWAAHDKEAAAHRVQVPSQEYSARLENLLPDTQYFVEVGACNSAGCGPSSDVIETFT
RKAPPSQPPRIISSVRSGSRYIITWDHVVALSNESTVTGYKVLYRPDGQHDGKLYSTHKH
SIELPIPRDGEYVVEVRAHSDGGDGVVSQVKISGAPTLSSGLLGFLLPALGTLVYLEF
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgtggttgctggccggttctcttgttctattatcttttacaacttgtctagca
gagtttacgtggcacagaaggtatggtcatggagtttctgaagaagacaaaggatttggc
ccaatttttgaagagcaaccaatcaataccatttatccagaagaatcgctggaaggaaaa
gtctcactcaactgccgggcaagagctagcccttttccagtttacaagtggagaatgaat
aatggggacgtggacctgacgagtgaccggtacagcatggtgggtggaaaccttgtcatc
aacaaccctgacaagcagaaagacgctggcatatattactgcttggcctcaaataactat
gggatggtccggagtacagaggcaaccctgagctttgggtatcttgatcctttcccacct
gaggaacgtcctgaagtcaaagtgaaagaagggaagggaatggttctgctctgcgatcct
ccataccattttccagatgatcttagctatcgctggcttttaaatgaatttcctgtcttt
atcacaatggataaacggagatttgtgtctcagacaaatggcaacctctacatcgcaaac
gttgaggcttctgacagaggcaattattcctgctttgtctccagtccttccattacgaag
agtgtcttcagcaaattcatcccactcattccaatccccgaacgaacaacaaaaccatat
ccagctgatatcgtagtacagttcaaggacatatatgcactgatgggtcaaaatgtgact
ctagagtgttttgcacttggaaatcctgttcctgatatccgatggaggaaagtgttagaa
ccaatgcctagcactgctgagattagcacctcgggggctgtcctcaagatcttcaatatc
caactagaagatgaaggcatttatgaatgtgaggctgagaatattagagggaaggataaa
caccaggcaagaatttatgttcaagcatttccagaatgggtagaacatatcaatgacaca
gaggttgacataggcagtgatctctactggccttgcatagctacaggaaagcccatccct
tccatccgatggctgaaaaatggatatgcgtaccaaaaaggggagcttcgactatatgat
gtgacttttgacaacgctggcatgtatcagtgcatcgcagaaaacacttacggagctatc
tatgccaatgctgagctgaagattctggctttggctccaacttttgaattcaatccaatg
aagaagaagcttctggctgctaaaggaggaagggtgatcattgagtgtaaacccaaagct
gcaccgaaaccaaaattttcctggagcaaaggaacagagtggcttgtcaacagcagcaga
gtactgatttgggaggatgggagcttggaaatcaataacatcacaaggaatgatggcggt
gtctacacgtgcttcgcagagaataacagagggaaagctaacagcacgggcacccttgtc
atcacagatcccacacgcatcatcctagctccgattaacgcggatatcactgttggagag
aatgccaccatgcagtgcgcagcatcctttgaccccagccttgacctcaccttcgtgtgg
tccttcaatggttacgtgattgattttaacaaggagaatgttcactaccagaggaacttc
atgctggatgccaatggggagctcctcatccgaaatgcccagctaaagcatgctggaaga
tacacgtgcactgcccagaccattgtagacaattcttcagcctccgctgaccttgttgtg
cgaggtccccctggcccaccaggtggtctgagaatagaagacatcagagccacttctgtg
gcacttacctggagccgtggttcagacaatcacagtcctatctctaagtatactatccag
accaagaccattctttcagatgattggaaagatgcaaaaacagatcccccaattattgaa
ggaaacatggaggccgcaaaagcagtggatttaatcccatggatggagtatgaatttcgt
gtggtagcaaccaatacattgggcataggagagcccagtttaccatcaaaccgaattaaa
acagatggcgctgcacccaatgtggctccatctgatgtaggaggcgggggtggaagcaac
agagagctgaccattacatgggcgcctttgtcaagagaataccattatggcaacaatttt
ggttacatcgtggcctttaagccatttgatggagaagaatggaaaaaggtgacagttact
aatccagacactggcagatatgtccataaggacgaatccatgagcccttccactgccttt
caagtcaaagttaaagctttcaacaacaaaggggatgggccttacagcctcatcgctgtc
attaactcagcacaggatgctcccagtgaagcccctacagaagttggtgttaaggtctta
tcctcttctgagatttcagttcactggaagcatgttttagaaaaaatagtggaaagctac
cagattcgatattgggcggcccacgacaaggaagcagctgcacaccgggttcaagtcccc
agccaggagtactcagccaggctggagaatctcctgcctgatactcagtactttgtggaa
gtgggagcctgcaacagtgctggttgtggaccttcaagtgacgtgattgagaccttcacc
aggaaagcgcctcccagccagccgccaaggatcatcagttctgtaaggtccggctcccgc
tacatcatcacctgggaccacgtggtcgcactgtccaatgagtctacagtgacgggatac
aaggtcctctacaggcccgacgggcagcacgacggcaagctgtactccacgcacaagcat
tccatcgagttgcccatcccccgcgacggcgagtacgtggtggaggttcgagcgcacagt
gacggcggagatggggtcgtgtctcaagtcaaaatttcaggtgcgcctaccctgtcttca
ggacttctcggcttcctgctgcctgccttgggcaccctcgtctacttggaattctga
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