Perognathus longimembris pacificus (Pacific pocket mouse): 125366117
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Entry
125366117 CDS
T08928
Symbol
Utp18
Name
(RefSeq) U3 small nucleolar RNA-associated protein 18 homolog
KO
K14553
U3 small nucleolar RNA-associated protein 18
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125366117 (Utp18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
plop03009
]
125366117 (Utp18)
Ribosome biogenesis [BR:
plop03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
125366117 (Utp18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40_Prp19
WD40_WDHD1_1st
WD40
WDR55
WD40_CDC20-Fz
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR19_1st
EIF3I
WD40_RFWD3
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Cytochrom_D1
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Beta-prop_VPS8
NBCH_WD40
WD40_like
Beta-prop_WDR75_1st
Ge1_WD40
Pox_D5
Motif
Other DBs
NCBI-GeneID:
125366117
NCBI-ProteinID:
XP_048222513
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Position
17:complement(33180941..33205851)
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AA seq
558 aa
AA seq
DB search
MPPERRSRTKPDRGAGSRPDRKTQKKPYGQARPNRGGLPRKAAQSSSHRIPPAQSSLATA
LEAAAAAAEAERRLRQRNRRTLEEDIPAEERCLEELVFGDVEEDEGALLRRLRGSQAQHG
ENLDDSEGENETHDKFPSQKKPVWVDEEDEDEEMVDMKNNRFRKDMMKNATETKLSKDKL
QKRLKEEFQHAMGGVPVWAETSKQKTSSDDESEEDDDDLLQRTGNFISTSTSLPRGILKM
KNCQQANAERPTTARISSVQFHPCAQVVMVAGLDNSISLFQVDGKTNPKIQSIYLDRFPI
YKACFTANGEEVLATSVHSKVLYVYDMLAGKLIPVHQVRGLKEKVVRRFEVSPDGSFLLI
NGIAGYSHLLSMKTKELIGSMKINGRVSACTFSSDSKKIYTSSADGEVYIWDVNSRRCLN
RFVDEGNLCALSIATSRNGQYVACGSSSGVVNIYNQDSCLQETNPKPIKAIMNLVTGVTS
LTFNPTTEILAIASRKMKEAVRLVHLPSCTVFSNFPVAKKKTISRVQTMDFSPRSGYFAV
GNEKGKALMYRLHHFSDF
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgccgcccgaacggaggagccgtacgaaaccagaccggggagccggctccaggcctgac
cgaaagactcaaaaaaagccatatgggcaagccagaccgaaccggggcgggcttccccgg
aaggctgctcagtcttcatcccatcggatacctccggcccagtcgagcttggcgaccgca
ctcgaggcggcagcggcggcggcggaggcagagcgccggctccggcagcggaaccgccgg
accttagaggaagacataccggccgaggagcggtgcttggaggagctggtcttcggcgac
gtggaggaagatgagggcgcactgctgcggcgtctgcggggctcgcaggctcaacatggt
gaaaacttggatgattctgaaggagagaatgaaacacatgataaatttccctctcagaag
aagccagtatgggtggatgaagaagatgaagatgaagaaatggttgacatgaagaacaat
aggtttcggaaagatatgatgaaaaatgccacagaaactaaactctcaaaagacaagctc
cagaagagactcaaagaagaatttcaacatgctatgggaggagtacctgtatgggcagag
actagtaagcaaaaaacatcttcagatgatgaaagtgaagaggatgatgatgatctgttg
cagaggactgggaattttatatccacatcaacttctcttccacgaggaatcttgaagatg
aagaactgccagcaggctaatgctgaacggcctaccacggctcggatctcctcagttcag
ttccatccttgtgctcaggtggtgatggttgctgggttagataattctatttcactcttt
caggttgatggcaaaacaaatcctaaaatccagagcatctatttggacaggtttccaatc
tataaggcctgttttaccgcaaatggagaagaggttctagccacaagtgttcatagtaaa
gttctttatgtctatgatatgctagctggaaagttaattcctgtgcatcaagtgagaggt
ttgaaagagaaagtagtgagacgctttgaagtctccccagatggatccttcttgctcata
aatggtattgctggatattctcatttactgtcaatgaagaccaaggagctgattggtagc
atgaagattaatggaagagtatcagcatgtactttctcttcagatagtaagaaaatatac
acttcttctgcggatggcgaagtttatatttgggacgtgaactctaggaggtgccttaac
agattcgttgatgaaggcaatttatgtgcattaagcattgccacatcaaggaatggacag
tatgtcgcttgtggttctagttctggagtggtaaacatatacaatcaagattcctgtctc
caagaaacaaacccaaagccaataaaagctataatgaacctggttactggtgttacttct
ctgaccttcaatcccactacagaaatcttggcaatagcctcaagaaaaatgaaagaagct
gtcagattggttcatcttccctcttgtacggtattttctaacttcccagttgctaagaag
aagactatttctcgtgtccaaaccatggatttttctcccagaagtggatattttgctgtg
gggaatgagaagggcaaagccctgatgtataggttgcaccatttttcggacttctaa
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