Perognathus longimembris pacificus (Pacific pocket mouse): 125366135
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Entry
125366135 CDS
T08928
Symbol
Cltc
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04142
Lysosome
plop04144
Endocytosis
plop04721
Synaptic vesicle cycle
plop04961
Endocrine and other factor-regulated calcium reabsorption
plop05016
Huntington disease
plop05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
125366135 (Cltc)
04142 Lysosome
125366135 (Cltc)
09150 Organismal Systems
09155 Excretory system
04961 Endocrine and other factor-regulated calcium reabsorption
125366135 (Cltc)
09156 Nervous system
04721 Synaptic vesicle cycle
125366135 (Cltc)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
125366135 (Cltc)
09164 Neurodegenerative disease
05016 Huntington disease
125366135 (Cltc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
plop04131
]
125366135 (Cltc)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
plop04147
]
125366135 (Cltc)
Membrane trafficking [BR:
plop04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
125366135 (Cltc)
Exosome [BR:
plop04147
]
Exosomal proteins
Proteins found in most exosomes
125366135 (Cltc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_PEP5_VPS11
TPR_1
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
125366135
NCBI-ProteinID:
XP_048222546
LinkDB
All DBs
Position
17:complement(27326896..27397327)
Genome browser
AA seq
1682 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSN
PIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN
QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPSKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPEQGQQFAQILVQDE
EPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLIHAPQVADAIL
GNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVN
FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYY
DSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVL
LESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPSVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEV
VQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLSELEEFINGPNNAHIQQ
VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELIAMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAIITMMS
HPTDAWKEGQFKDIITRVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS
KVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLE
KHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQE
EKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDAIKEKVDKL
DASESLRKEEEQATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPPYGQPQPGFGY
SM
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atggcccagattctgccaattcgttttcaggagcatctccagctccagaacctgggtatt
aacccagcaaacatcggcttcagtaccctaactatggagtcagacaaattcatctgcatt
agagaaaaagtaggagagcaggcccaggtggtaatcattgatatgaatgacccaagcaat
ccaattcgaagaccaatatcagcagacagcgccatcatgaatcctgctagcaaagtaatt
gcactgaaagctgggaaaactcttcagatatttaacattgaaatgaaaagtaaaatgaag
gcccatactatgactgatgatgtcactttttggaaatggatctcattgaatacggttgct
cttgttacggataatgcagtttatcattggagtatggaaggagagtctcagccagtgaaa
atgtttgaccgtcattctagccttgcaggatgccagattatcaattatcgcacagatgca
aaacaaaagtggttgcttctaactggcatatctgcacagcaaaatcgtgtggtaggagct
atgcagttatattctgtagataggaaagtgtctcaacccattgaaggacatgcggctagc
tttgcacagtttaagatggaaggaaatgcagaagaatcaacgttattttgttttgcagta
cggggtcaagctggaggaaagttacatattattgaagttggcacaccacccacggggaac
caaccatttccaaagaaggcagtggatgttttctttcctccagaagcacaaaatgacttt
cctgttgcaatgcagatcagtgaaaagcatgatgtggtatttttgattacaaagtatggc
tatatccacctgtatgatcttgagactggtacctgcatctacatgaacagaatcagtgga
gaaacaatatttgttactgcacctcacgaagccactgctggaataattggagtaaacaga
aagggacaggtcctgtcagtttgtgtggaagaagaaaacataattccttacatcaccaat
gtactgcagaatcctgatttggctctgagaatggctgtacgtaacaacctagctggtgct
gaggaactctttgcccggaaatttaatgctctttttgcccagggaaattactcagaggcc
gcaaaggtggctgccaatgcaccaaagggaattcttcgtactccagacactatccgtcgg
ttccagagtgttccagctcagccaggtcaaacttcacctttacttcagtactttggaatc
cttttagaccagggccagctgaacaaatatgaatccttagagttatgtaggcctgtactt
caacaaggacgaaaacagcttttggagaaatggttaaaggaagataagctggaatgttct
gaagaactgggtgatcttgtaaaatctgtggacccaacattagcacttagtgtgtacctc
agggctaatgtcccaagtaaagtcatccagtgctttgcagaaacaggtcaagtccagaag
attgttttatatgctaaaaaagttggttatactccagactggatctttctgctgagaaat
gtaatgcgtatcagtccagagcagggacagcagtttgctcaaatattagttcaggatgaa
gagcctcttgctgatattacacagattgtggatgtctttatggaatacaatctaatccag
cagtgcacagcattcctgcttgatgctctgaaaaataaccgcccatccgaaggtccttta
cagacacgattgcttgagatgaaccttatacatgcacctcaagttgcagatgcaattcta
ggaaatcagatgttcacacattatgaccgggctcatatcgctcagctatgtgaaaaagct
ggcctactacagcgcgcattagaacactttactgacttatatgatataaagcgtgcagtt
gttcacacccaccttcttaatcctgagtggttagtgaattactttggatccttatcagtg
gaagactctttagaatgtctcagagccatgctgtctgctaatattcgccaaaatctacag
atctgtgttcaagtggcttctaagtatcatgaacaactgtcaacccaatctctgattgaa
ctctttgaatcttttaagagttttgaaggtctcttttattttctgggatccattgttaac
tttagtcaggacccagacgtgcactttaaatatatccaggcagcttgcaagactgggcag
atcaaagaagtggaaagaatctgcagagaaagcaactgctatgatcctgagcgagtcaag
aatttcctcaaggaagcgaaactaacagatcagttgccacttatcattgtctgtgatcga
tttgactttgtccatgatttggtgctgtatttatatagaaataatcttcaaaagtatata
gaaatatatgtgcagaaggtgaacccaagtcgacttccagtggttattggaggattactt
gatgttgactgctctgaagatgtcattaagaacttaattctagttgtgagaggtcagttc
tctactgatgagcttgtggctgaagttgaaaaaagaaacagattgaaactgcttctgcct
tggctagaggccagaattcatgagggctgtgaggaacctgctactcacaatgcattagcc
aaaatctacattgacagtaataataacccagagagatttcttcgtgaaaatccttattat
gacagccgtgttgttggaaagtactgtgagaagagagatccacatctagcctgtgtcgct
tatgaacgtggccagtgtgatttggaacttattaatgtttgcaatgagaactccctcttc
aaaagtctctcccgctatctggtacgtcgaaaggatccagaattgtggggtagtgtactg
ctggaaagcaatccatacagaagacccctaattgaccaggttgtacagacagccttgtct
gagactcaggaccctgaagaagtgtcagtaactgtcaaggcttttatgactgcagacctt
cctaatgaactcattgaactgctggagaaaattgtccttgataactctgtattcagtgaa
cacaggaatctgcaaaatctccttatcctcactgcaattaaggctgatcgtacacgcgtc
atggagtatattaatcgcctggataattatgatgccccagatattgctaatattgctatc
agcaatgagctatttgaggaagcatttgccattttccggaaatttgatgtcaatacttca
gcagtgcaggtattaattgaacacattggaaacttggaccgggcatatgagtttgccgaa
cgctgcaatgaaccttccgtctggagtcaacttgcaaaagcccagctgcagaagggaatg
gtgaaagaagccattgattcttatatcaaagcagatgatccttcatcctacatggaagtt
gttcaagctgccaatactagtggaaattgggaagaactggtgaaatatttgcagatggcc
cgtaagaaggctcgtgagtcctatgtggagacagaattgatatttgcactggctaaaaca
aaccgcctttcagagttagaagagttcatcaatgggccaaataatgctcatattcaacaa
gttggtgaccgttgttacgatgaaaaaatgtatgatgctgctaagttgttgtacaataat
gtttccaattttggacgcttggcgtctactctggttcacctgggtgaatatcaggcagca
gttgatggagctcggaaagctaacagtactcgaacatggaaagaggtctgctttgcatgt
gtagatgggaaagagttccgtcttgctcagatgtgtggacttcatattgtagtacatgca
gatgaattagaggaacttatcaactactaccaggatcgtggatattttgaagaactaata
gccatgttggaagcagcattgggccttgagcgagctcatatgggaatgtttaccgaatta
gctattttgtactctaaatttaagccacagaaaatgagggagcacctggagttgttctgg
tccagagtgaatattcctaaggtgctaagagccgcagaacaagcgcatctttgggcagaa
ctggtgtttttgtatgacaaatatgaagaatttgataatgccataattaccatgatgagt
catccaactgatgcatggaaagaagggcagttcaaagatatcattaccagggttgccaat
gttgaactgtactacagagcaatacagttctacttagaattcaagcctcttttgctaaat
gatttgctgatggtgctgtctccacggttggatcacactcgtgcagtcaattatttcagc
aaggtcaaacaactcccactggtgaaaccatatttacgttcagttcagaaccataacaac
aaatctgtgaatgaatcgctgaacaacctctttattacagaagaagattatcaggctcta
cgaacatcaatagatgcttatgacaactttgacaatatttcacttgctcagcgtttggaa
aaacatgaactcattgagttcagaagaattgctgcttatctcttcaaaggcaataatcgt
tggaaacagagtgtagagctctgcaagaaagatagtctttacaaggatgcaatgcagtat
gcctctgaatctaaagatactgaattggctgaagaactcctacagtggtttttgcaagaa
gaaaaaagagagtgctttggagcttgtctctttacctgttatgatcttttaaggccagat
gttgtcctggaaactgcctggagacacaatatcatggattttgccatgccctatttcatc
caggtcatgaaggaatacttgaccaaggttgatgcaataaaggaaaaggtggataaacta
gatgcttcagaatcactgagaaaagaagaagaacaagctacagagacacagcccattgtt
tatggtcagccccagctgatgttgacagcaggacccagtgttgcagtccctccccaggca
ccttttggttatggttatactgcaccaccatatggccagccacagcctggttttgggtac
agcatgtga
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integrated database retrieval system
