Perognathus longimembris pacificus (Pacific pocket mouse): 125366170
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Entry
125366170 CDS
T08928
Symbol
Nr1d1
Name
(RefSeq) nuclear receptor subfamily 1 group D member 1 isoform X1
KO
K03728
nuclear receptor subfamily 1 group D member 1
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop04710
Circadian rhythm
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09150 Organismal Systems
09159 Environmental adaptation
04710 Circadian rhythm
125366170 (Nr1d1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
plop03000
]
125366170 (Nr1d1)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
plop03310
]
125366170 (Nr1d1)
Transcription factors [BR:
plop03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
125366170 (Nr1d1)
Nuclear receptors [BR:
plop03310
]
1. Thyroid hormone like
1D. Rev-Erb
125366170 (Nr1d1)
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Paralog
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
125366170
NCBI-ProteinID:
XP_048222618
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Position
17:complement(37557547..37565752)
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AA seq
616 aa
AA seq
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MTTLDSNNNTGGVITYIGSSGSSPSRTSPESLYSDNSNGSFQSLTQGCPTYFPPSPTGSL
TQDPARSFGSIPPSLSDDGSPSSSSSSSSSSSSSSFYNGSPPGTLQVAMEDSSRVSPSKS
TSNITKLNGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKRCLKNENCSIV
RINRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLAEMQSAMNLANNQLSSQCPLE
TSSTQHPTSGPMGPSPPPAPAPSPLVGFSQFPQQLTPPRSPSPEPTMEDVISQVARAHRE
IFTYAHDKLGTSPSNFNANHASGSPAATTPHRWESHSCPPAPNDNNTLAAQRHNEALNGL
RQGPSSYPPAWPPGPAHHSCHQPNSNGHRLCPTHMYSAPEGEAPANGPRQSNSKNVLLAC
PMNMYPHGRSGRTVQEIWEDFSMSFTPAVREVVEFAKHIPGFRDLSQHDQVTLLKAGTFE
VLMVRFASLFNVKDQTVMFLSRTTYSLQELGAMGMGDLLSAMFDFSEKLNSLALTEEELG
LFTAVVLVSADRSGMENSASVEQLQETLLRALRALVLKNRPSETSRFTKLLLKLPDLRTL
NNMHSEKLLSFRVDAQ
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccctggactccaacaacaacacaggtggcgtcatcacctacattggctccagt
ggctcttccccgagccgcaccagccctgagtctctctacagtgacaattccaatggcagc
ttccagtccctgactcaaggctgtcccacctacttcccaccatcacccactggctccctt
acccaggatccagctcgctcctttgggagcattccacccagcctcagtgatgatggctcc
ccttcctcctcctcttcttcttcttcttcctcctcctcctcctccttctataatgggagt
cccccaggaaccctacaagtggccatggaggacagcagccgagtgtcccccagcaagagc
accagcaatatcaccaagttgaatggcatggtgctactctgcaaagtgtgtggggacgtg
gcttcaggcttccactatggtgtgcatgcctgtgagggctgcaagggctttttccgtcgg
agcattcagcagaatatccagtacaaaaggtgtctgaaaaatgagaactgttccattgtc
cgcatcaaccgcaaccgctgccagcagtgtcgcttcaagaagtgtctctccgtgggcatg
tctcgagatgctgtacgtttcgggcgcatccccaaacgagagaagcagaggatgcttgct
gagatgcagagtgccatgaacctggccaataaccagctgagcagccagtgccccttggag
acctcatccacccagcaccccacttcaggccctatgggcccctcaccacctcctgctcca
gccccctcacccttggtgggcttctctcagttcccacagcagctcacaccacccagatcc
cccagccctgagcccaccatggaggatgtgatatcccaggtggccagggcccatcgagag
atcttcacctatgcccatgacaagctgggcacttcacctagcaacttcaatgccaaccat
gcatctggaagccctgcagccaccaccccacaccgctgggagagtcacagctgccctcct
gcccccaatgacaataacaccttggctgcccagcgccacaatgaggctttgaacggtcta
cgccagggcccctcctcctaccctcctgcttggccccctggccctgcccaccatagctgc
caccagcccaacagcaatgggcaccggctatgccccacccacatgtactcggctccagaa
ggggaggcacctgccaacgggccaaggcaaagcaactccaagaacgttctgctggcttgt
cccatgaacatgtacccccacggacgcagcggccggactgtgcaggaaatctgggaggac
ttttctatgagcttcacgcctgctgtgcgggaggtggtagaatttgcaaagcacatccct
ggcttccgtgacctttctcagcatgaccaggtcaccttgcttaaggctggcacttttgag
gtgctaatggtgcgctttgcatcattgttcaacgtgaaggaccagacagtgatgttcctg
agccgcaccacctacagcctgcaagagctgggcgccatgggcatgggagacctgctcagc
gccatgttcgacttcagcgagaagctcaactccctggcgctgacagaggaggagctaggc
ctcttcacggcggtggtgcttgtatctgcagaccgctcgggcatggagaattccgcttcg
gtggagcagctccaggagacgctgctgcgggctcttcgggctctggtgctgaagaaccgg
ccctcggagacttcccgcttcaccaagctgctgctcaagctgccggacctgcggaccctg
aacaacatgcattccgagaagctgctgtccttccgggtggacgcccagtga
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