Perognathus longimembris pacificus (Pacific pocket mouse): 125366186
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Entry
125366186 CDS
T08928
Symbol
Shmt1
Name
(RefSeq) serine hydroxymethyltransferase, cytosolic
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop00260
Glycine, serine and threonine metabolism
plop00630
Glyoxylate and dicarboxylate metabolism
plop00670
One carbon pool by folate
plop01100
Metabolic pathways
plop01200
Carbon metabolism
plop01230
Biosynthesis of amino acids
plop01240
Biosynthesis of cofactors
plop01523
Antifolate resistance
plop04981
Folate transport and metabolism
Module
plop_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
125366186 (Shmt1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
125366186 (Shmt1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
125366186 (Shmt1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
125366186 (Shmt1)
09160 Human Diseases
09176 Drug resistance: antineoplastic
01523 Antifolate resistance
125366186 (Shmt1)
Enzymes [BR:
plop01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
125366186 (Shmt1)
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Motif
Pfam:
SHMT
Aminotran_1_2
Motif
Other DBs
NCBI-GeneID:
125366186
NCBI-ProteinID:
XP_048222640
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Position
17:13710467..13757074
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AA seq
485 aa
AA seq
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MEKAPVNGAHKDVALWASHDKMLVQPLKESDVEVYNIIKKEGNRQKVGLELIASENFASR
AVLEALGSCLNNKYSEGYPGQRYYGGNEFVDELEILCQKRALQAYHLDPKCWGVNVQPYS
GSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKVSATSIFFESMPYKVYPDSG
YINYDQLEENARLFHPKLIIAGTSCYSRNLDYERLRKIADECGAYLMADMAHISGLVAAG
VVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVRSIDPKTGKEIMYELESLINSAVFPG
LQGGPHNHAIAGVAVALKQAMSMEFKVYQLQVIANCRALSETLTELGYTIVTGGSDNHLI
LVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQ
KVAHFIHRGIELTLEIQKDMSVRATMKEFKEKLAEDEKYQSALQALRTEVESFASAFPLP
GVPEV
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggctccagtcaatggggcccacaaggatgttgccctgtgggcctcccacgat
aagatgctggtacagcccctcaaggagagtgatgttgaggtttacaacatcattaagaag
gaaggcaaccggcagaaggttggattggaattgatcgcttcagagaattttgccagccgc
gcagtattggaggccctaggctcttgcttaaataacaaatactctgaggggtatcctggg
cagaggtattatggcgggaatgagttcgttgatgaactggagatactatgtcagaagcga
gcgctgcaggcctaccatctggatcctaagtgctggggagtcaatgtccagccatactca
ggttcccctgcaaacttcgcagtatacactgccctggtagagccccatgggcgtatcatg
ggcctggacctgcctgatgggggccacttgactcacggtttcatgactgacaagaagaaa
gtctcagcaacatccatcttctttgagtccatgccatataaggtttatccagactctggc
tacatcaactatgaccagctggaggagaatgcccgcctcttccacccaaagttgatcatt
gcagggacgagctgttactcccgcaacctggactatgaacgtttgcggaagattgctgat
gagtgcggtgcctatctcatggcagacatggcacatatcagtggtctagtggcagctggt
gtggtgccctcaccttttgaacactgccatgtggtgaccaccacaacacacaagactctg
agaggctgccgtgccggcatgattttctacaggaaaggcgtgcgcagcattgatcccaag
actggaaaagaaattatgtacgaactagagtctctcatcaactctgcagtgttcccaggc
ctgcaagggggtccccacaaccacgccattgctggggttgccgtggccctgaagcaagcc
atgagtatggaattcaaagtgtaccagttgcaggtcatcgccaactgcagggctctgtct
gagaccctcacagagctgggctacacaatagtgacaggtggttctgacaaccatttgatc
cttgtggatctccgttccaagggtacagatggtggaagggctgagaaggtgctagaagcc
tgttctattgcctgcaacaagaatacctgcccaggtgacaagagtgccctgcggcccagc
ggactgcgactggggaccccagcactgacttctcgaggacttttggaaaaagacttccaa
aaggtagcacactttatccacagaggcatagagctgactctggagattcagaaggacatg
agcgtaagggccacaatgaaggagttcaaggagaaactggcagaagatgagaagtatcag
agcgcactgcaagctctccgaacagaagtagagagcttcgcttctgccttcccactgccc
ggagtgcctgaagtctga
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