Perognathus longimembris pacificus (Pacific pocket mouse): 125366368
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Entry
125366368 CDS
T08928
Symbol
Dhx8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125366368 (Dhx8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
plop03041
]
125366368 (Dhx8)
Enzymes [BR:
plop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125366368 (Dhx8)
Spliceosome [BR:
plop03041
]
Complex C
Other components
Step II factors
125366368 (Dhx8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
Flavi_DEAD
AAA_16
Sigma54_activ_2
PhoH
TsaE
ABC_tran
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
125366368
NCBI-ProteinID:
XP_048222960
LinkDB
All DBs
Position
17:40164360..40197965
Genome browser
AA seq
1240 aa
AA seq
DB search
MAVAVATAGILMGSEPGPAEELAKLEYLSLVSKVCTELDNHLGINDKDLAEFVISLAEKN
TTFDTFKSSLVKNGAEFTDSLISNLLRLIQTMRPPTKPSTSKDPVVKPKTEKEKLKELFP
VLCQPDNPSVRTMLDEDDVKVAVDVLKELEALMPSAAGQEKQKDAEHRDRTKKKKRSRSR
DRDRDRDRDRDRDRDRDRDRDRERERERDRDRERDRDHKRRRRSRSRSHSRTQERNKGKS
RYRSRSKSHSPLKDRKDRDKYGERNLDRWRDKHVDRPPPEEPAIGDIYNGKVTSIMQFGC
FVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGTKTSLSMKDVDQ
ETGEDLNPNRRRNLVGETNEETSMRNPDRPTHLSLVSAPEVEDDSLERKRLTRISDPEKW
EIKQMIAANVLSKEEFPDFDEETGILPKVDDDEDEDLEIELVEEEPPFLRGHTKQSMDMS
PIKIVKNPDGSLSQAAMMQSALAKERRELKQAQREAEMDSIPMGLNKHWVDPLPDAEGRQ
IAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKTQMSILEQRESLPIYKLKEQLVQAVHD
NQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQ
EVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGL
LKKTVQKRQDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYTKEPETDYLDAS
LITVMQIHLTEPPGDILVFLTGQEEIDTACEILYERMKSLGPDVPELIILPVYSALPSEM
QTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPIS
QAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDL
LSFDFMDAPPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLG
CSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNP
WCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDP
QEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAF
FKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISRAFRRR
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggctgtggccaccgcgggaatcctgatgggctcggagccaggccctgcggaa
gagctcgccaaactcgaatatttgtctctggtgtcgaaggtttgcacggaactggacaat
cacttagggatcaacgacaaggatctagctgaatttgtgatcagtcttgctgagaaaaat
accacctttgatacatttaagtcttctctggtaaaaaatggagcagaattcacggattct
cttattagcaatctacttcgactcatacaaaccatgcgccctccaacaaagccttctact
agcaaagatccagttgttaaacccaaaacggaaaaagaaaagctgaaagaactcttcccc
gtcctttgccagccagacaacccttctgttcggaccatgctggatgaagatgatgtgaag
gtcgccgtggatgtcttaaaggaactggaagccttaatgcccagtgcagcaggtcaagag
aagcaaaaagatgctgagcaccgggacaggacgaagaagaagaagcggagtcggagccga
gatcgagaccgtgatcgtgatcgagaccgtgatcgagaccgtgatcgtgatcgagaccgt
gatcgagaacgagaacgagagcgagacagagacagagagcgagacagagaccacaagcgg
agacgccgatcccgctctcgatcacattcccggacccaagagagaaataaagggaagtct
agatatcggtccaggagcaagagtcacagccccctcaaagaccggaaggaccgggacaag
tatggggagaggaatctggacagatggcgggataagcatgtggaccgccctccccctgag
gagccagccatcggggacatttacaacggcaaagttaccagcatcatgcagtttggatgc
tttgtacagctggagggactaaggaagcggtgggaaggcctggtgcacatctctgagctc
cggcgggaaggccgtgtggccaatgtggctgatgtggtgagcaaaggccagagagtcaaa
gtcaaagtgttgtccttcactgggaccaagaccagcctgagcatgaaggatgttgatcaa
gagacgggagaagatctaaacccaaatcgacggcgaaatctagttggggagaccaacgag
gaaacttcaatgcggaatccagacagacccactcatctctcccttgtcagtgcccctgaa
gtagaggacgactctctggagcgcaagcgcctcacccgcatctctgacccagagaagtgg
gagatcaaacagatgattgctgccaatgtcctttccaaagaagagtttccagactttgat
gaagagactggcatccttcctaaggtggatgatgatgaagatgaggaccttgagattgaa
ctggttgaggaagagcctccattcctgagaggtcacaccaagcaaagcatggacatgagc
cccatcaaaattgttaagaatccggatggctccctctcccaggctgccatgatgcagagt
gctttggctaaggaacggcgggaactcaagcaggctcagcgagaagcagagatggattct
attcccatgggactcaacaaacactgggttgatcctttgcctgatgcggaaggcaggcag
attgctgccaatatgaggggcattgggatgatgcccaatgacattcctgaatggaagaag
catgcttttgggggcaacaaagcttcttacgggaaaaagactcagatgtcaatcctggag
cagagggagagcctgcccatctataaactgaaggagcagctggtccaggctgtgcatgac
aatcaaatcctaattgttattggagagacaggatctgggaagacaacgcagatcacccag
tacctggcagaggccggctacacttctaggggcaagattgggtgtactcagccaagaaga
gtggcagccatgtccgtggccaaaagagtatcagaggaatttggttgttgtttaggtcaa
gaggtaggctataccattcggtttgaggactgtaccagtcctgagacagtcatcaagtac
atgacggatggcatgttgctcagggaatgtctcattgaccctgacctcactcagtacgcc
atcatcatgttggatgaggcccacgaaagaacaattcacacggacgtgctttttgggttg
ctgaaaaagacagttcagaaacggcaggacatgaagctgattgtcacctcagctaccttg
gatgcagtgaagttttctcagtacttctatgaagcacccatcttcaccatcccaggtcga
acttacccagtagaaatactgtacacaaaggaacctgagacagattacctggatgccagc
ctcatcactgttatgcagatccacttaacggagccaccaggtgatatcttggtcttcttg
actggtcaggaggagatcgatactgcttgtgagatcctgtatgaaagaatgaaatccctg
ggacctgatgttccagagttaattatcctaccagtgtactctgctcttcccagtgagatg
cagacccggatctttgacccagctcctcctggcagcagaaaggttgtgattgccaccaac
atcgcggagacctcactgactattgatggcatctactatgtggtagaccctgggttcgtg
aagcagaaagtttacaattctaagacagggattgaccaacttgtggtgacgcctatttct
caggctcaagctaagcaacgagctggcagagctgggagaaccggtccagggaagtgttat
aggctgtacacagaacgtgcctaccgagatgaaatgctgaccaccaacgtgccggaaatc
cagagaaccaacttggcaagcacagtactgtccctcaaggccatgggcatcaatgacctg
ctgtcatttgatttcatggacgcccccccaatggaaaccttgatcacggccatggagcag
ctgtatacactaggggccctggatgatgagggcctgctcactcgcttgggtcgcaggatg
gcagagttccctctggaaccaatgctgtgcaaaatgctcatcatgtctgtgcatctgggc
tgcagtgaggagatgctgaccattgtatccatgctgtcagtgcagaatgtcttctacagg
cccaaggataagcaagccctagcagatcagaagaaggccaaattccaccagactgaaggg
gaccatctcaccctgctggccgtatacaactcctggaaaaacaataagttctccaacccg
tggtgctacgagaactttatccaggcccgttccctgcgccgggcccaggacatccgtaag
cagatgttaggcataatggacagacacaagctggacgtggtgtcctgtggcaagtccaca
gtccgagtccagaaggccatctgcagtggcttcttccgtaatgctgccaagaaagacccg
caggagggttaccggaccctcatcgaccagcaggtggtctacatccacccttccagtgca
ctcttcaacagacagccagaatgggtagtgtatcacgaactggtgctgaccacaaaggag
tacatgcgtgaagtcaccaccattgacccccggtggctcgtagagtttgccccagccttc
ttcaaggtctctgatccaaccaagctcagcaagcagaagaagcagcagcgactcgagccc
ctatacaaccgctatgaggagccgaatgcctggagaatatcccgggccttccggcggcgc
tga
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