Perognathus longimembris pacificus (Pacific pocket mouse): 125366534
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Entry
125366534 CDS
T08928
Symbol
Ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
plop
Perognathus longimembris pacificus (Pacific pocket mouse)
Pathway
plop03040
Spliceosome
plop05202
Transcriptional misregulation in cancer
plop05205
Proteoglycans in cancer
Brite
KEGG Orthology (KO) [BR:
plop00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125366534 (Ddx5)
09160 Human Diseases
09161 Cancer: overview
05202 Transcriptional misregulation in cancer
125366534 (Ddx5)
05205 Proteoglycans in cancer
125366534 (Ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
plop03041
]
125366534 (Ddx5)
03009 Ribosome biogenesis [BR:
plop03009
]
125366534 (Ddx5)
Enzymes [BR:
plop01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125366534 (Ddx5)
Spliceosome [BR:
plop03041
]
Complex A
U1 snRNP components
U1 related factors
125366534 (Ddx5)
Complex B
125366534 (Ddx5)
Ribosome biogenesis [BR:
plop03009
]
Eukaryotic type
Pre-60S particles
Helicases
125366534 (Ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
P68HR
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
BNIP2
Motif
Other DBs
NCBI-GeneID:
125366534
NCBI-ProteinID:
XP_048223255
LinkDB
All DBs
Position
17:complement(44895003..44902245)
Genome browser
AA seq
614 aa
AA seq
DB search
MSSYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQ
EHPDLARRTAQEVETYRRSKEVTVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAI
QAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR
RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI
NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK
MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN
SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGS
GRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGAKTQNGVYSAANY
TNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMHNGMNQQAYAYPATAA
APMIGYPMPTGYSQ
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagttattcgagtgaccgggaccgcggccgggatcgagggtttggtgcgcctcga
tttggagggagtagggcaggacccctatctggaaagaagtttggaaatcctggggagaaa
ctagttaaaaagaagtggaaccttgatgagctccccaaatttgaaaagaatttttatcaa
gaacatcctgatttggctaggcgcacagcacaagaggtagagacatacagaagaagcaag
gaagttacagtgagaggtcacaactgtccaaaaccagttctgaatttctatgaagcaaat
ttccctgcaaatgtcatggatgtgattgcaaggcagaactttactgaacccactgctatt
caagctcagggatggccagttgctcttagtggattggacatggttggagtagcacagact
ggatctgggaaaacgttgtcttatttgctgcctgccattgttcacatcaatcatcagcca
ttcctagaaagaggtgatgggcctatttgtttggtgctggcaccaactcgagaactggcc
cagcaggtgcagcaagtagctgctgaatactgtagagcttgtcgcttgaagtctacttgc
atctatggtggtgctcccaagggaccacaaatacgtgatttggagagaggtgtggagatc
tgcattgcaacgcctggaagactgattgactttttagagtgtgggaaaaccaatctgaga
agaacaacctaccttgtccttgatgaagcagatagaatgcttgatatgggttttgaaccc
caaataaggaagattgtggatcagataagacctgatagacaaaccctaatgtggagtgcg
acttggccaaaagaagtaagacagcttgctgaagatttcctgaaagattacattcatata
aacattggtgcactagaactgagtgcaaaccacaacattcttcagattgtggatgtatgt
catgatgtagagaaggatgaaaaacttattcgtctaatggaagagatcatgagcgagaag
gagaataaaaccattgtttttgttgaaaccaaaagaagatgtgatgagcttaccagaaag
atgaggagagatgggtggcctgccatgggtatccatggtgacaaaagtcaacaggaacgt
gactgggttctaaatgaattcaaacatggaaaagctcctattctgattgctacagatgtg
gcctccagagggctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaac
tcctcagaggattatattcatcgaattggaagaactgctcgcagtaccaaaacaggcaca
gcatacactttctttacacctaataacataaagcaagtgagcgaccttatctctgtgctt
cgtgaagctaatcaagcaattaatcccaagttgcttcagttggtcgaagacagaggttca
ggtcgttccaggggtagaggaggcatgaaggatgaccgccgggacagatactctgcgggc
aaaaggggtggatttaatacctttagagacagggaaaattatgacagaggttactctagt
ctgcttaagagagattttggggcaaaaactcagaatggtgtttacagtgctgcaaattac
accaatgggagctttggaagtaattttgtgtctgctggtatacagaccagttttaggact
ggtaatccaacagggacttaccagaatggttatgatagcactcagcaatacggaagtaat
gttccaaatatgcacaatggtatgaaccaacaggcatatgcgtatcctgctactgcggct
gcgcctatgattggctatccaatgccaacaggatattctcaataa
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integrated database retrieval system
